Lsa-MIR393c

Basic info.

• miRNA locus ID
• Lsa-MIR393c

• miRNA locus accession
• PmiREN000000077

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_2  212110892  212111117  +

• Comments
• A member of family MIR393

• Confidence level
• 

Secondary strurture and sequence

TGTTGCA   -  -                        T      TTTTAT      T     -------       NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN   ATATATATAT
       GCA GG TGGAAGCTTCCAAAGGGATCGCAT GATCCG      AATTAT AACTC       AATCTTT                                                    TAT          
       ||| || |||||||||||||||||||||||| ||||||      |||||| |||||       |||||||                                                    |||          A
       CGT CC GCCTTTGAAGGTTTCTCTAGCGTA CTAGGT      TTAATA TTGAG       TTAGAAA                                                    GGT          
TGTGGTA   G  T                        -      ------      T     CCTAGCT       -------------------------------------------TTTGACGAA   TACCTACCCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]