Single miRNA

Lsa-MIR398b

Basic info.

miRNA locus ID
Lsa-MIR398b

miRNA locus accession
PmiREN000000089

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 96622352 96622462 -

Comments
A member of family MIR399

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AAT        --C    AA    T     A            -TTA      CAAC
   GGTAGAGG   ATCC  CAGG GCGAC TGGGAACACATG    AATGTG    
   ||||||||   ||||  |||| ||||| ||||||||||||    ||||||     
   TCGTCTCT   TGGG  GTCC CGCTG ACTCTTGTGTAC    TTACAC    
GGC        TTT    AC    C     G            CGCC      TAAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_4961.1	NA	NA	2
Lsat_1_v5_gn_1_5160.1	NA	4	NA
Lsat_1_v5_gn_2_131741.1	NA	4	NA
Lsat_1_v5_gn_3_8480.1	NA	4	NA
Lsat_1_v5_gn_3_9061.1	NA	NA	2
Lsat_1_v5_gn_4_153121.1	NA	NA	2
Lsat_1_v5_gn_4_170201.1	NA	NA	2
Lsat_1_v5_gn_4_2781.1	NA	NA	2
Lsat_1_v5_gn_4_74461.1	NA	4	NA
Lsat_1_v5_gn_5_166221.1	NA	4	NA
Lsat_1_v5_gn_5_16880.1	NA	4	NA
Lsat_1_v5_gn_5_1841.1	NA	NA	2
Lsat_1_v5_gn_5_186481.1	NA	4	NA
Lsat_1_v5_gn_7_4140.1	NA	NA	2
Lsat_1_v5_gn_7_49821.1	NA	NA	2
Lsat_1_v5_gn_8_166900.1	NA	NA	2
Lsat_1_v5_gn_8_41941.1	3	NA	NA
Lsat_1_v5_gn_8_76840.1	NA	4	NA
Lsat_1_v5_gn_9_24981.1	NA	4	NA
Lsat_1_v5_gn_9_33481.1	NA	4	NA
Lsat_1_v5_gn_9_70141.1	NA	NA	2
Lsat_1_v5_gn_9_8340.1	NA	NA	2