Lsa-MIRN533

Basic info.

• miRNA locus ID
• Lsa-MIRN533

• miRNA locus accession
• PmiREN000000158

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_3  30530605  30530769  -

• Comments
• A member of family MIRN533

• Confidence level
• 

Secondary strurture and sequence

  A  T  TT   C        T        A   -          G    T    T  T   T   G         T  -  AA
   TA GA  GTA TATAATCC CGGGCAGC CCA ATGCATATCT GATA GTTG GC CAT TGA ACGGGTGCA GC CA  
   || ||  ||| |||||||| |||||||| ||| |||||||||| |||| |||| || ||| ||| ||||||||| || ||  A
   AT CT  CAT ATATTAGG GCCCGTCG GGT TACGTGTAGA CTAT CAAC CG GTA ACT TGCCCACGT TG GT  
CCA  T  TT   A        T        -   C          A    T    T  C   C   G         -  T  AT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]