Single miRNA

Lsa-MIRN1690

Basic info.

miRNA locus ID
Lsa-MIRN1690

miRNA locus accession
PmiREN000000133

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_9 31850443 31850578 -

Comments
A member of family MIRN1690

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   TTCATTC    G         C     T     T              ---  --T     -TC     T
          TAAT CAATGTCAT ACCTC GAAAC CAAGAACATGTCGT   CT   CGAAG   GAATC 
          |||| ||||||||| ||||| ||||| ||||||||||||||   ||   |||||   ||||| C
          ATTG GTTGCAGTA TGGAG CTTTG GTTCTTGTGTAGCA   GA   GTTTC   CTTAG 
AATACTAACA    -         T     -     T              AAT  CTT     TTT     T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID: 9
Chromosome: Lsat_1_v8_lg_9
Cluster start: 31850443
Cluster end: 31842499

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Lsa-miRN1690 , Lsa-miRN1687 , Lsa-miRN1652a , Lsa-miRN1652b	PmiREN000000133, PmiREN000000169, PmiREN000000144, PmiREN000000171	Lsat_1_v8_lg_9	-	31850443	31842499

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_43840.1	1	NA	NA
Lsat_1_v5_gn_1_101021.1	2.5	NA	NA
Lsat_1_v5_gn_1_101761.1	2.5	NA	NA
Lsat_1_v5_gn_1_101920.1	2.5	NA	NA
Lsat_1_v5_gn_1_102000.1	3	NA	NA
Lsat_1_v5_gn_1_102041.1	2.5	NA	NA
Lsat_1_v5_gn_1_102120.1	3	NA	NA
Lsat_1_v5_gn_1_102140.1	2.5	NA	NA
Lsat_1_v5_gn_1_102180.1	2.5	NA	NA
Lsat_1_v5_gn_1_105241.1	2	NA	2
Lsat_1_v5_gn_1_39580.1	NA	NA	2
Lsat_1_v5_gn_1_91840.1	3	NA	NA
Lsat_1_v5_gn_1_91860.1	3	NA	NA
Lsat_1_v5_gn_1_91880.1	3	NA	NA
Lsat_1_v5_gn_1_91940.1	3	NA	NA
Lsat_1_v5_gn_1_92080.1	3	NA	NA
Lsat_1_v5_gn_1_92100.1	3	NA	NA
Lsat_1_v5_gn_1_93520.1	3	NA	NA
Lsat_1_v5_gn_1_93600.1	3	NA	NA
Lsat_1_v5_gn_1_93640.1	3	NA	NA
Lsat_1_v5_gn_1_93741.1	3	NA	NA
Lsat_1_v5_gn_1_94001.1	3	NA	NA
Lsat_1_v5_gn_1_94121.1	3	NA	NA
Lsat_1_v5_gn_1_94261.1	3	NA	NA
Lsat_1_v5_gn_1_94401.1	3	NA	NA
Lsat_1_v5_gn_1_94481.1	3	NA	NA
Lsat_1_v5_gn_1_94641.1	3	NA	NA
Lsat_1_v5_gn_1_95000.1	3	NA	NA
Lsat_1_v5_gn_2_10420.1	NA	4	NA
Lsat_1_v5_gn_2_15901.1	3	NA	NA
Lsat_1_v5_gn_2_17301.1	NA	4	NA
Lsat_1_v5_gn_2_5001.1	2	NA	0
Lsat_1_v5_gn_2_60401.1	3	NA	NA
Lsat_1_v5_gn_2_86861.1	2	NA	2
Lsat_1_v5_gn_3_95921.1	NA	NA	2
Lsat_1_v5_gn_4_144940.1	NA	NA	2
Lsat_1_v5_gn_4_145880.1	1.5	2	0
Lsat_1_v5_gn_4_147480.1	2.5	NA	NA
Lsat_1_v5_gn_4_148140.1	2.5	NA	2
Lsat_1_v5_gn_4_148200.1	2.5	NA	NA
Lsat_1_v5_gn_4_148261.1	1	NA	NA
Lsat_1_v5_gn_4_148360.1	1.5	NA	0
Lsat_1_v5_gn_4_148421.1	0.5	NA	2
Lsat_1_v5_gn_4_150441.1	1	NA	0
Lsat_1_v5_gn_4_150461.1	3	NA	NA
Lsat_1_v5_gn_4_150481.1	3	NA	NA
Lsat_1_v5_gn_4_150561.1	2.5	NA	NA
Lsat_1_v5_gn_4_150641.1	1	NA	0
Lsat_1_v5_gn_4_150681.1	2.5	NA	2
Lsat_1_v5_gn_4_1720.1	NA	NA	2
Lsat_1_v5_gn_4_37660.1	2	NA	NA
Lsat_1_v5_gn_4_37821.1	NA	4	NA
Lsat_1_v5_gn_4_48740.1	3	NA	NA
Lsat_1_v5_gn_4_96541.1	2.5	NA	NA
Lsat_1_v5_gn_5_101700.1	3	NA	NA
Lsat_1_v5_gn_5_104140.1	3	NA	NA
Lsat_1_v5_gn_5_106521.1	NA	NA	2
Lsat_1_v5_gn_5_159861.1	2	3	0
Lsat_1_v5_gn_5_27220.1	NA	4	NA
Lsat_1_v5_gn_5_38001.1	NA	NA	2
Lsat_1_v5_gn_5_39440.1	1	NA	0
Lsat_1_v5_gn_5_39460.1	1	NA	NA
Lsat_1_v5_gn_5_39581.1	1	NA	0
Lsat_1_v5_gn_5_77580.1	NA	NA	0
Lsat_1_v5_gn_6_67720.1	NA	NA	2
Lsat_1_v5_gn_6_94680.1	3	NA	NA
Lsat_1_v5_gn_8_112140.1	2.5	NA	1
Lsat_1_v5_gn_8_127960.1	3	NA	NA
Lsat_1_v5_gn_8_2021.1	2.5	NA	NA
Lsat_1_v5_gn_8_61661.1	NA	NA	2
Lsat_1_v5_gn_9_14781.1	2	NA	NA
Lsat_1_v5_gn_9_61041.1	NA	NA	2
Lsat_1_v5_gn_9_90140.1	3	NA	1
Lsat_1_v5_gn_9_90700.1	2.5	NA	NA
Lsat_1_v5_gn_9_91281.1	2	NA	2
Lsat_1_v5_gn_9_91880.1	1	NA	2
Lsat_1_v5_gn_9_91940.1	1	NA	NA
Lsat_1_v5_gn_9_92720.1	2.5	NA	1
Lsat_1_v5_gn_9_92740.1	1	NA	0
Lsat_1_v5_gn_9_92800.1	3	NA	NA
Lsat_1_v5_gn_9_92980.1	1	NA	0
Lsat_1_v5_gn_9_93340.1	1	NA	0