Lsa-MIR156c

Basic info.

• miRNA locus ID
• Lsa-MIR156c

• miRNA locus accession
• PmiREN000000005

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_3  31047591  31047716  -

• Comments
• A member of family MIR156

• Confidence level
• 

Secondary strurture and sequence

ACT        ---C  TA           -   GA        A A       A      CAAAC
   TGTGGGGG    GA  GAGCTGACAGA AGA  GTGAGCAC C AAGGCAA TTGTAC     
   ||||||||    ||  ||||||||||| |||  |||||||| | ||||||| ||||||     T
   ACACCTCC    CT  TTCGACTGTCT TCT  TACTCGTG G TTTTGTT AGTATG     
 AT        ATTT  TC           A   AG        - G       -      TCCTG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]