Single miRNA

Lsa-MIR156e

Basic info.

miRNA locus ID
Lsa-MIR156e

miRNA locus accession
PmiREN000000011

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 175902887 175903018 -

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ATAA   T    G     ---         -    A        C     T    CTCGCAAATAGT    TTT
    AGG GAAG GTGGT   GGTGACAGA AGAG GTGAGCAC CATGG CTTT            GCGC   
    ||| |||| |||||   ||||||||| |||| |||||||| ||||| ||||            ||||    
    TTC TTTT TATCG   CCACTGTCT TCTC CACTCGTG GTATC GAAG            CGTG   
 ACC   T    G     TCC         G    C        C     -    ----------TT    TAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_128400.1	2	2	NA
Lsat_1_v5_gn_1_14560.1	0	0	NA
Lsat_1_v5_gn_1_34600.1	NA	4	NA
Lsat_1_v5_gn_1_52780.1	NA	4	NA
Lsat_1_v5_gn_2_22181.1	NA	4	NA
Lsat_1_v5_gn_2_86281.1	3	NA	NA
Lsat_1_v5_gn_3_11920.1	NA	NA	2
Lsat_1_v5_gn_3_135740.1	3	NA	NA
Lsat_1_v5_gn_3_139021.1	NA	4	NA
Lsat_1_v5_gn_3_31000.1	1	1	NA
Lsat_1_v5_gn_3_89440.1	2.5	NA	NA
Lsat_1_v5_gn_4_112081.1	3	NA	NA
Lsat_1_v5_gn_4_113241.1	2.5	3	NA
Lsat_1_v5_gn_4_1141.1	1	2	NA
Lsat_1_v5_gn_4_135220.1	3	NA	NA
Lsat_1_v5_gn_4_139200.1	NA	4	NA
Lsat_1_v5_gn_4_184960.1	1	2	NA
Lsat_1_v5_gn_4_421.1	1	NA	NA
Lsat_1_v5_gn_4_81541.1	1	2	NA
Lsat_1_v5_gn_5_12360.1	1	NA	NA
Lsat_1_v5_gn_5_176161.1	NA	4	NA
Lsat_1_v5_gn_6_116940.1	NA	4	NA
Lsat_1_v5_gn_7_11040.1	1	2	NA
Lsat_1_v5_gn_7_56801.1	NA	4	NA
Lsat_1_v5_gn_7_9801.1	3	NA	NA
Lsat_1_v5_gn_8_134640.1	1	2	NA
Lsat_1_v5_gn_8_59160.1	NA	4	NA
Lsat_1_v5_gn_9_28021.1	1	2	NA