Single miRNA

Lsa-MIR159a

Basic info.

miRNA locus ID
Lsa-MIR159a

miRNA locus accession
PmiREN000000017

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_8 111204 111406 +

Comments
A member of family MIR159

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TGGGTGAACGAGTTGAA   GAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGATCCCTCAAGTCCTATCTTTGTTGTTGTATA
                 GTA                                                                                         
                 |||                                                                                         G
                 GAG                                                                                         
                T   CTTTCTTCTCCTCCACATCTCGAGGGAAGTTAGGTTTTTTCCTAGTCTTTTTCCTATTACTTAGAGGACCGCATACGTTCGGTGTTTCG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_2840.1	2	4	NA
Lsat_1_v5_gn_0_39281.1	2.5	NA	0
Lsat_1_v5_gn_0_5400.1	3	NA	NA
Lsat_1_v5_gn_0_9341.1	NA	3	NA
Lsat_1_v5_gn_1_19821.1	NA	NA	2
Lsat_1_v5_gn_1_3740.1	NA	3	NA
Lsat_1_v5_gn_1_52540.1	3	NA	NA
Lsat_1_v5_gn_1_58621.1	NA	NA	2
Lsat_1_v5_gn_1_76101.1	NA	3	NA
Lsat_1_v5_gn_2_118860.1	NA	NA	2
Lsat_1_v5_gn_2_125281.1	NA	4	NA
Lsat_1_v5_gn_2_132241.1	NA	NA	1
Lsat_1_v5_gn_2_132960.1	NA	3	NA
Lsat_1_v5_gn_2_21500.1	NA	NA	2
Lsat_1_v5_gn_2_56801.1	NA	3	NA
Lsat_1_v5_gn_2_77400.1	NA	4	NA
Lsat_1_v5_gn_2_78720.1	NA	3	NA
Lsat_1_v5_gn_2_81541.1	NA	NA	2
Lsat_1_v5_gn_2_82701.1	NA	NA	2
Lsat_1_v5_gn_2_860.1	2	NA	NA
Lsat_1_v5_gn_3_10380.1	NA	NA	2
Lsat_1_v5_gn_3_11961.1	NA	4	NA
Lsat_1_v5_gn_3_126241.1	2.5	NA	NA
Lsat_1_v5_gn_3_18820.1	NA	NA	2
Lsat_1_v5_gn_3_21740.1	3	3	NA
Lsat_1_v5_gn_3_4041.1	NA	4	2
Lsat_1_v5_gn_3_61721.1	NA	4	NA
Lsat_1_v5_gn_3_83660.1	NA	4	2
Lsat_1_v5_gn_3_86821.1	NA	NA	2
Lsat_1_v5_gn_4_12381.1	NA	2	2
Lsat_1_v5_gn_4_166381.1	NA	3	NA
Lsat_1_v5_gn_4_17140.1	2.5	NA	NA
Lsat_1_v5_gn_4_21561.1	NA	3	NA
Lsat_1_v5_gn_4_29640.1	NA	NA	2
Lsat_1_v5_gn_4_39920.1	3	4	NA
Lsat_1_v5_gn_4_41201.1	3	NA	NA
Lsat_1_v5_gn_4_46760.1	2	2	NA
Lsat_1_v5_gn_4_49480.1	NA	4	NA
Lsat_1_v5_gn_4_78160.1	NA	4	NA
Lsat_1_v5_gn_4_92901.1	NA	NA	2
Lsat_1_v5_gn_5_112181.1	2	NA	NA
Lsat_1_v5_gn_5_113161.1	NA	NA	2
Lsat_1_v5_gn_5_124021.1	2	3	NA
Lsat_1_v5_gn_5_127021.1	NA	4	NA
Lsat_1_v5_gn_5_129201.1	2.5	3	0
Lsat_1_v5_gn_5_156800.1	3	NA	NA
Lsat_1_v5_gn_5_169160.1	NA	4	2
Lsat_1_v5_gn_5_16921.1	NA	NA	2
Lsat_1_v5_gn_5_183921.1	NA	4	NA
Lsat_1_v5_gn_5_28001.1	3	NA	NA
Lsat_1_v5_gn_5_34141.1	NA	NA	2
Lsat_1_v5_gn_5_53121.1	NA	4	NA
Lsat_1_v5_gn_5_75800.1	2.5	NA	NA
Lsat_1_v5_gn_5_82881.1	NA	NA	2
Lsat_1_v5_gn_5_84581.1	NA	4	NA
Lsat_1_v5_gn_5_96421.1	3	NA	NA
Lsat_1_v5_gn_6_110460.1	NA	4	NA
Lsat_1_v5_gn_6_110981.1	NA	4	NA
Lsat_1_v5_gn_6_87540.1	NA	NA	2
Lsat_1_v5_gn_7_103061.1	1.5	2	0
Lsat_1_v5_gn_7_19661.1	NA	4	NA
Lsat_1_v5_gn_7_23540.1	NA	NA	2
Lsat_1_v5_gn_7_51761.1	NA	NA	2
Lsat_1_v5_gn_7_77561.1	NA	NA	2
Lsat_1_v5_gn_7_92401.1	1.5	2	0
Lsat_1_v5_gn_8_104101.1	2.5	NA	NA
Lsat_1_v5_gn_8_114001.1	NA	NA	2
Lsat_1_v5_gn_8_120961.1	3	NA	NA
Lsat_1_v5_gn_8_123241.1	NA	NA	2
Lsat_1_v5_gn_8_136300.1	NA	4	NA
Lsat_1_v5_gn_8_153980.1	3	NA	NA
Lsat_1_v5_gn_8_16481.1	NA	NA	2
Lsat_1_v5_gn_8_17320.1	NA	NA	2
Lsat_1_v5_gn_8_31840.1	NA	NA	2
Lsat_1_v5_gn_8_36901.1	NA	NA	2
Lsat_1_v5_gn_8_44220.1	3	NA	NA
Lsat_1_v5_gn_8_62341.1	2.5	NA	2
Lsat_1_v5_gn_8_83920.1	3	NA	NA
Lsat_1_v5_gn_8_8600.1	NA	4	NA
Lsat_1_v5_gn_8_98661.1	NA	NA	2
Lsat_1_v5_gn_9_123180.1	2.5	NA	NA
Lsat_1_v5_gn_9_123581.1	3	NA	NA
Lsat_1_v5_gn_9_27440.1	NA	NA	0
Lsat_1_v5_gn_9_41041.1	NA	4	NA
Lsat_1_v5_gn_9_65581.1	NA	NA	2
Lsat_1_v5_gn_9_68900.1	NA	NA	2
Lsat_1_v5_gn_9_9761.1	NA	NA	2
Lsat_1_v5_gn_9_99361.1	3	NA	NA