Single miRNA

Lsa-MIR160a

Basic info.

miRNA locus ID
Lsa-MIR160a

miRNA locus accession
PmiREN000000025

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_2 192332424 192332546 +

Comments
A member of family MIR160

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

                       GATGAGTGTAAGTATATGCCTGGCTCCCTGTATGCCATTTTCAGAGCC
                   ACAC                                                
                   ||||                                                 
                   TATA                                                
TCTTTCTTGTTCTACCCTT    CGAACCGAGGAGTATGCGGTAGGTGCCTCCGGTAACATCTTTGGCTAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_37861.1	NA	4	NA
Lsat_1_v5_gn_2_100181.1	1	NA	2
Lsat_1_v5_gn_2_112381.1	1	NA	0
Lsat_1_v5_gn_2_82040.1	NA	4	NA
Lsat_1_v5_gn_3_26081.1	NA	4	NA
Lsat_1_v5_gn_4_23340.1	NA	4	NA
Lsat_1_v5_gn_4_40760.1	NA	4	NA
Lsat_1_v5_gn_4_47321.1	NA	4	NA
Lsat_1_v5_gn_4_5001.1	NA	NA	2
Lsat_1_v5_gn_5_140620.1	NA	4	NA
Lsat_1_v5_gn_5_166221.1	NA	4	NA
Lsat_1_v5_gn_5_173401.1	NA	NA	2
Lsat_1_v5_gn_5_187341.1	NA	3	NA
Lsat_1_v5_gn_5_57261.1	NA	4	NA
Lsat_1_v5_gn_5_62840.1	NA	4	NA
Lsat_1_v5_gn_5_82800.1	NA	4	NA
Lsat_1_v5_gn_6_114321.1	NA	4	NA
Lsat_1_v5_gn_6_30741.1	0.5	NA	0
Lsat_1_v5_gn_7_80140.1	NA	NA	2
Lsat_1_v5_gn_8_20161.1	1	NA	0
Lsat_1_v5_gn_8_92780.1	NA	4	NA
Lsat_1_v5_gn_8_93140.1	NA	4	NA
Lsat_1_v5_gn_8_93200.1	NA	4	NA
Lsat_1_v5_gn_9_112141.1	NA	4	NA
Lsat_1_v5_gn_9_119861.1	NA	4	NA
Lsat_1_v5_gn_9_1560.1	NA	4	NA
Lsat_1_v5_gn_9_53921.1	NA	4	NA
Lsat_1_v5_gn_9_69060.1	1	NA	0