Single miRNA

Lsa-MIR164a

Basic info.

miRNA locus ID
Lsa-MIR164a

miRNA locus accession
PmiREN000000027

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_1 81853166 81853277 -

Comments
A member of family MIR164

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AT     ----         TC          CA           -   CCATACACTT
  CAGGG    GAGAAGGTG  GTTGGAGAAG  GGGTACGTGCA AAG          
  |||||    |||||||||  ||||||||||  ||||||||||| |||          A
  GTCTC    TTTTTTCAC  CAACCTCTTC  CTCGTGCACGT TTC          
       TCAC         TA          CC           G   ACATTCAGTC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_45640.1	2	4	0
Lsat_1_v5_gn_1_110320.1	NA	NA	2
Lsat_1_v5_gn_1_14220.1	1	2	NA
Lsat_1_v5_gn_1_8140.1	NA	4	NA
Lsat_1_v5_gn_3_107501.1	NA	4	NA
Lsat_1_v5_gn_3_120840.1	3	NA	NA
Lsat_1_v5_gn_4_106860.1	NA	4	NA
Lsat_1_v5_gn_4_109600.1	0	NA	0
Lsat_1_v5_gn_4_110501.1	NA	NA	2
Lsat_1_v5_gn_4_139981.1	NA	NA	2
Lsat_1_v5_gn_4_169300.1	2	4	NA
Lsat_1_v5_gn_5_127660.1	0.5	1	0
Lsat_1_v5_gn_5_148441.1	NA	4	NA
Lsat_1_v5_gn_5_20601.1	1.5	NA	NA
Lsat_1_v5_gn_5_25181.1	3	NA	NA
Lsat_1_v5_gn_5_981.1	1.5	2	0
Lsat_1_v5_gn_6_54321.1	3	NA	NA
Lsat_1_v5_gn_6_83780.1	NA	4	NA
Lsat_1_v5_gn_7_104460.1	1	1	0
Lsat_1_v5_gn_7_109200.1	NA	4	NA
Lsat_1_v5_gn_8_77981.1	NA	NA	2
Lsat_1_v5_gn_9_26661.1	NA	NA	2
Lsat_1_v5_gn_9_29140.1	3	NA	NA