Single miRNA

Lsa-MIR166a

Basic info.

miRNA locus ID
Lsa-MIR166a

miRNA locus accession
PmiREN000000030

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_2 215647297 215647448 -

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TTGG      -TTTT   T        TT   C  C      TCT   ATCCT   T        ------       CA
     GAAAGC     TTG GGGGAATG  GTC GG TCGATG   ACA     ACA CATCATAC      ATACAAC  
     ||||||     ||| ||||||||  ||| || ||||||   |||     ||| ||||||||      |||||||  A
     CTTTCG     AAC CCCCTTAC  CGG CC GGCTGC   TGT     TGT GTAGTGTG      TATGTTG  
ATTTA      CTTTT   T        TT   A  A      ---   AATCT   T        AATATT       CT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_126440.1	3	NA	NA
Lsat_1_v5_gn_1_37081.1	0.5	NA	0
Lsat_1_v5_gn_2_100140.1	1	NA	NA
Lsat_1_v5_gn_2_24081.1	NA	4	NA
Lsat_1_v5_gn_3_115940.1	2	4	NA
Lsat_1_v5_gn_3_39421.1	3	NA	NA
Lsat_1_v5_gn_4_100080.1	0.5	NA	0
Lsat_1_v5_gn_4_113220.1	NA	NA	2
Lsat_1_v5_gn_4_177820.1	NA	NA	2
Lsat_1_v5_gn_4_178061.1	NA	NA	2
Lsat_1_v5_gn_4_39300.1	NA	4	NA
Lsat_1_v5_gn_5_134441.1	0.5	NA	NA
Lsat_1_v5_gn_5_32500.1	1	NA	0
Lsat_1_v5_gn_5_9381.1	NA	4	NA
Lsat_1_v5_gn_6_22720.1	1	NA	0
Lsat_1_v5_gn_6_45641.1	1	NA	0
Lsat_1_v5_gn_9_111560.1	NA	4	NA
Lsat_1_v5_gn_9_11760.1	3	NA	NA
Lsat_1_v5_gn_9_14160.1	NA	NA	2