Single miRNA

Lsa-MIR166c

Basic info.

miRNA locus ID
Lsa-MIR166c

miRNA locus accession
PmiREN000000032

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 329817280 329817401 +

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GGGATGATCAGATGC     T     TT      C  A          --------      CA
                 TAAGG GAATG  GTCTGG CC AAATCTTTCA        TGAAAT  
                 ||||| |||||  |||||| || ||||||||||        ||||||   
                 ATTCC CTTAC  CGGACC GG TTTAGAAAGT        ACTTTA  
GGTGTATCTTTTGGTCA     C     TT      A  C          TTAAGTAA      GA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_126440.1	3	NA	NA
Lsat_1_v5_gn_1_37081.1	0.5	NA	NA
Lsat_1_v5_gn_2_100140.1	1	NA	0
Lsat_1_v5_gn_2_24081.1	NA	4	NA
Lsat_1_v5_gn_3_115940.1	2	4	NA
Lsat_1_v5_gn_3_39421.1	3	NA	NA
Lsat_1_v5_gn_4_100080.1	0.5	NA	NA
Lsat_1_v5_gn_4_177820.1	NA	NA	2
Lsat_1_v5_gn_4_39300.1	NA	4	NA
Lsat_1_v5_gn_5_134441.1	0.5	NA	NA
Lsat_1_v5_gn_5_32500.1	1	NA	NA
Lsat_1_v5_gn_5_9381.1	NA	4	NA
Lsat_1_v5_gn_6_22720.1	1	NA	NA
Lsat_1_v5_gn_6_45641.1	1	NA	0
Lsat_1_v5_gn_8_4521.1	NA	NA	2
Lsat_1_v5_gn_9_111560.1	NA	4	NA
Lsat_1_v5_gn_9_11760.1	3	NA	NA