Lsa-MIR166d

Basic info.

• miRNA locus ID
• Lsa-MIR166d

• miRNA locus accession
• PmiREN000000033

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_6  136335047  136335253  -

• Comments
• A member of family MIR166

• Confidence level
• 

Secondary strurture and sequence

            TTTTTCTT   C        TT      C    G C       AAACCT   ATATATATATATGTGTGTGTATCATCATCATAGTCAACGCAATGGTT
      GAAGCT        TTG GGGGAATG  GTCTGG TCGA G CACTAGA      CAT                                               
      ||||||        ||| ||||||||  |||||| |||| | |||||||      |||                                               A
      CTTCGG        AAC CCCCTTAC  CGGACC GGCT C GTGGTCT      AGT                                               
TGTGTC      ----TGTC   C        TT      A    G T       ------   TCTTACTAAATAGTGGCACCGATCAGTTGCTTCTGTTACTTGTACTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]