Single miRNA

Lsa-MIR166e

Basic info.

miRNA locus ID
Lsa-MIR166e

miRNA locus accession
PmiREN000000034

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_6 11597659 11597938 +

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     G     TATCT TT   A        TT      C     GT         GCTTAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGATATAGATGTAGATGATTATGCGATGATATAATCAACTCAAT
      GAAGC     C  TTG GGGGAATG  GTTTGG TCGAG  CACTAGAGA                                                                                        
      |||||     |  ||| ||||||||  |||||| |||||  |||||||||                                                                                         
      CTTCG     G  AAC CCCCTTAC  CGGACC GGCTC  GTGGTCTAG                                                                                        
TCAACA     ---TT TT   C        TT      A     AT         GTCGCTAGTCCTAAGAGAGAAATTTGTGATCCTTACTAATTAGATCTTGCGTAATTAGTTGTTTCTGGTACCTAAGCTAGGCAACTGG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_126440.1	3	NA	NA
Lsat_1_v5_gn_1_37081.1	0.5	NA	NA
Lsat_1_v5_gn_1_75020.1	NA	NA	1
Lsat_1_v5_gn_2_100140.1	1	NA	NA
Lsat_1_v5_gn_2_24081.1	NA	4	NA
Lsat_1_v5_gn_3_115940.1	2	4	NA
Lsat_1_v5_gn_3_39421.1	3	NA	NA
Lsat_1_v5_gn_4_100080.1	0.5	NA	NA
Lsat_1_v5_gn_4_113220.1	NA	NA	2
Lsat_1_v5_gn_4_161.1	NA	NA	2
Lsat_1_v5_gn_4_177820.1	NA	NA	2
Lsat_1_v5_gn_4_39300.1	NA	4	NA
Lsat_1_v5_gn_5_134441.1	0.5	NA	NA
Lsat_1_v5_gn_5_32500.1	1	NA	NA
Lsat_1_v5_gn_5_9381.1	NA	4	NA
Lsat_1_v5_gn_6_22720.1	1	NA	NA
Lsat_1_v5_gn_6_45641.1	1	NA	0
Lsat_1_v5_gn_9_111560.1	NA	4	NA
Lsat_1_v5_gn_9_11760.1	3	NA	NA