Single miRNA

Lsa-MIR166f

Basic info.

miRNA locus ID
Lsa-MIR166f

miRNA locus accession
PmiREN000000035

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 224665660 224665799 -

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AG   ---  TA -T      T        TT G    C      CAT     CTTTT   -TT     AATT
  ACA   GA  G  GGTTTG GGGGGATG  G CTGG TCGATG   TCATC     CGA   AATTG    
  |||   ||  |  |||||| ||||||||  | |||| ||||||   |||||     |||   |||||    T
  TGT   CT  C  CCAAAC CTCCTTAC  C GACC GGCTAC   AGTAG     GCT   TTAAC    
     ATT  TG CC      T        TT G    A      AAC     AATAT   TCT     GACG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_126440.1	3	NA	NA
Lsat_1_v5_gn_1_37081.1	0.5	NA	NA
Lsat_1_v5_gn_2_100140.1	1	NA	NA
Lsat_1_v5_gn_2_103120.1	NA	NA	2
Lsat_1_v5_gn_2_69361.1	NA	NA	2
Lsat_1_v5_gn_3_115940.1	2	3	NA
Lsat_1_v5_gn_3_39421.1	3	NA	NA
Lsat_1_v5_gn_4_100080.1	0.5	NA	NA
Lsat_1_v5_gn_4_39300.1	NA	4	NA
Lsat_1_v5_gn_5_118620.1	NA	4	NA
Lsat_1_v5_gn_5_134441.1	0.5	NA	0
Lsat_1_v5_gn_5_147080.1	NA	NA	2
Lsat_1_v5_gn_5_32500.1	1	NA	NA
Lsat_1_v5_gn_6_22720.1	1	NA	0
Lsat_1_v5_gn_6_45641.1	1	NA	0
Lsat_1_v5_gn_8_139701.1	NA	4	NA
Lsat_1_v5_gn_8_146440.1	NA	NA	2
Lsat_1_v5_gn_9_11760.1	3	NA	NA
Lsat_1_v5_gn_9_29020.1	NA	NA	2
Lsat_1_v5_gn_9_29121.1	NA	NA	2
Lsat_1_v5_gn_9_95201.1	NA	4	NA