Lsa-MIR167a

Basic info.

• miRNA locus ID
• Lsa-MIR167a

• miRNA locus accession
• PmiREN000000040

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_2  134015080  134015316  +

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

 TTCA      - T    A            C  C         A   GCCAAA  GTG       T  G     G  -C     A    GA    TTAT G      T  A    TGTTCAGT
     TGTTGG T TGAG GATTGAAGCTGC AG ATGATCTGG AGT      CC   TCTCCTT TT TGCTT TG  TATAT TATA  TAAT    A GCTAGA AT TATA        
     |||||| | |||| |||||||||||| || ||||||||| |||      ||   ||||||| || ||||| ||  ||||| ||||  ||||    | |||||| || ||||         
     ACAACC G ACTC CTAACTTCGACG TC TACTGGACC TTA      GG   AGGGGAA GG ATGGG AT  GTGTA ATAT  ATTG    T TGATTT TG GTGT        
TTTTA      C T    A            T  C         A   ---ATA  ---       T  G     G  TT     C    -A    -TGT G      T  G    TTTTCTGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]