Lsa-MIR168a

Basic info.

• miRNA locus ID
• Lsa-MIR168a

• miRNA locus accession
• PmiREN000000045

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_3  27466687  27466858  -

• Comments
• A member of family MIR168

• Confidence level
• 

Secondary strurture and sequence

   CG            T        C          T     A    -A         GGATCGTTTTTCGCCGTTGTACCTCACGG
     TTACGGCGGTTT CTGATTCG TTGGTGCAGG CGGGA CGGT  TCGCCGGCG                             
     |||||||||||| |||||||| |||||||||| ||||| ||||  |||||||||                             A
     AGTGCTGCCAAA GGCTAAGT AACTACGTTC GCCCT GCCG  AGTGGCTTT                             
TTGTA            -        C          C     G    CA         ACTAAGAGGGAGTGTTGTAAATGCTCAGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]