Lsa-MIR169a

Basic info.

• miRNA locus ID
• Lsa-MIR169a

• miRNA locus accession
• PmiREN000000048

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_1  71889821  71889951  -

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

  AAAAGAGTACT      T   -         -    TT    AATCAC   TCAATT        GA
             CTTGTT GGT AGCCAAGGA TGAC  GCCT      ACC      AGGTGTTG  
             |||||| ||| ||||||||| ||||  ||||      |||      ||||||||  A
             GGACAG CCA TCGGTTCCT ACTG  TGGA      TGG      TCCACAAT  
ACTCTTTCTTCTC      T   A         C    --    -CTACT   -TTTCT        GA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]