Single miRNA

Lsa-MIR171f

Basic info.

miRNA locus ID
Lsa-MIR171f

miRNA locus accession
PmiREN000000065

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_4 92479219 92479345 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  ATCGGTATAACAATA     A                    C      AAT    GTTTTTA
                 ATACG GATGTTGGTGCGGTTCAATC GAAAGC   GCTC       
                 ||||| |||||||||||||||||||| ||||||   ||||       G
                 TATGC CTATAACCGTGCCGAGTTAG TTTTTG   CGAG       
GTCATCAACTTCATCAG     A                    T      CTC    AACTTGG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_23560.1	3	NA	NA
Lsat_1_v5_gn_0_33241.1	NA	4	NA
Lsat_1_v5_gn_2_129780.1	NA	NA	2
Lsat_1_v5_gn_3_128721.1	1.5	NA	NA
Lsat_1_v5_gn_3_36300.1	NA	NA	2
Lsat_1_v5_gn_3_681.1	1.5	NA	NA
Lsat_1_v5_gn_3_78621.1	0.5	1	0
Lsat_1_v5_gn_4_153400.1	1.5	2	2
Lsat_1_v5_gn_4_154881.1	NA	4	NA
Lsat_1_v5_gn_4_164800.1	3	4	NA
Lsat_1_v5_gn_4_8840.1	NA	4	NA
Lsat_1_v5_gn_5_13080.1	NA	NA	2
Lsat_1_v5_gn_5_154341.1	NA	4	NA
Lsat_1_v5_gn_5_86400.1	NA	4	NA
Lsat_1_v5_gn_6_18481.1	NA	NA	2
Lsat_1_v5_gn_6_3180.1	1.5	NA	NA
Lsat_1_v5_gn_6_60701.1	NA	NA	2
Lsat_1_v5_gn_7_80520.1	NA	4	NA
Lsat_1_v5_gn_7_9261.1	1.5	NA	2
Lsat_1_v5_gn_8_110401.1	NA	NA	2
Lsat_1_v5_gn_8_83841.1	NA	NA	2
Lsat_1_v5_gn_8_98420.1	NA	NA	2