Single miRNA

Lsa-MIR172c

Basic info.

miRNA locus ID
Lsa-MIR172c

miRNA locus accession
PmiREN000000068

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_8 24394820 24394937 +

Comments
A member of family MIR172

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TAAT    -   T  A A                     A   GGTTG   TATATATAT
     GTCA TTG TT C GGTGCGGCATCATCAAGATTC CAT     CCC         
     |||| ||| || | ||||||||||||||||||||| |||     |||         G
     CAGT AAC AA G CTACGTCGTAGTAGTTCTAAG GTA     GGG         
TATGT    T   T  A A                     A   ---AA   TTTCTAAAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_27321.1	NA	4	NA
Lsat_1_v5_gn_0_45861.1	NA	4	NA
Lsat_1_v5_gn_0_5781.1	NA	NA	2
Lsat_1_v5_gn_1_11340.1	NA	3	NA
Lsat_1_v5_gn_1_113961.1	NA	4	NA
Lsat_1_v5_gn_1_12201.1	3	NA	NA
Lsat_1_v5_gn_1_126160.1	2.5	4	NA
Lsat_1_v5_gn_1_130441.1	NA	4	NA
Lsat_1_v5_gn_1_30661.1	NA	4	NA
Lsat_1_v5_gn_1_46661.1	NA	4	NA
Lsat_1_v5_gn_1_53680.1	1.5	0	NA
Lsat_1_v5_gn_1_69101.1	NA	4	NA
Lsat_1_v5_gn_1_76820.1	NA	4	NA
Lsat_1_v5_gn_1_84220.1	3	3	NA
Lsat_1_v5_gn_1_90261.1	3	NA	NA
Lsat_1_v5_gn_2_109741.1	1.5	NA	0
Lsat_1_v5_gn_2_116160.1	1.5	NA	2
Lsat_1_v5_gn_2_3201.1	NA	4	NA
Lsat_1_v5_gn_2_55280.1	NA	4	NA
Lsat_1_v5_gn_2_58440.1	3	NA	NA
Lsat_1_v5_gn_2_65621.1	NA	NA	2
Lsat_1_v5_gn_2_85920.1	1.5	NA	NA
Lsat_1_v5_gn_3_110621.1	3	NA	NA
Lsat_1_v5_gn_3_126981.1	NA	4	NA
Lsat_1_v5_gn_3_14761.1	NA	4	NA
Lsat_1_v5_gn_3_87860.1	NA	4	NA
Lsat_1_v5_gn_3_88160.1	NA	4	NA
Lsat_1_v5_gn_3_89681.1	1.5	1	2
Lsat_1_v5_gn_4_105921.1	NA	NA	2
Lsat_1_v5_gn_4_114841.1	NA	4	NA
Lsat_1_v5_gn_4_145200.1	NA	4	NA
Lsat_1_v5_gn_4_16500.1	NA	4	NA
Lsat_1_v5_gn_4_165341.1	1.5	NA	1
Lsat_1_v5_gn_4_25980.1	2	3	NA
Lsat_1_v5_gn_4_30301.1	NA	3	NA
Lsat_1_v5_gn_4_49520.1	NA	4	NA
Lsat_1_v5_gn_4_61721.1	NA	3	NA
Lsat_1_v5_gn_4_64461.1	NA	3	NA
Lsat_1_v5_gn_4_71721.1	NA	4	NA
Lsat_1_v5_gn_5_127360.1	NA	3	NA
Lsat_1_v5_gn_5_13660.1	NA	NA	2
Lsat_1_v5_gn_5_2120.1	NA	NA	2
Lsat_1_v5_gn_5_26140.1	3	4	NA
Lsat_1_v5_gn_5_72480.1	NA	3	NA
Lsat_1_v5_gn_5_79461.1	NA	NA	2
Lsat_1_v5_gn_5_90260.1	NA	4	NA
Lsat_1_v5_gn_6_116000.1	NA	3	NA
Lsat_1_v5_gn_6_12421.1	NA	4	NA
Lsat_1_v5_gn_6_29600.1	0.5	0	2
Lsat_1_v5_gn_6_30080.1	2.5	NA	NA
Lsat_1_v5_gn_6_55260.1	NA	NA	2
Lsat_1_v5_gn_7_105821.1	2.5	NA	NA
Lsat_1_v5_gn_7_4020.1	NA	4	NA
Lsat_1_v5_gn_7_68120.1	NA	NA	2
Lsat_1_v5_gn_7_77041.1	NA	NA	2
Lsat_1_v5_gn_8_116281.1	NA	NA	2
Lsat_1_v5_gn_8_14040.1	NA	4	NA
Lsat_1_v5_gn_8_144901.1	NA	NA	2
Lsat_1_v5_gn_8_166540.1	NA	4	NA
Lsat_1_v5_gn_8_18040.1	0.5	NA	0
Lsat_1_v5_gn_8_221.1	NA	NA	2
Lsat_1_v5_gn_8_3941.1	NA	4	NA
Lsat_1_v5_gn_8_65360.1	NA	NA	2
Lsat_1_v5_gn_8_72921.1	NA	NA	0
Lsat_1_v5_gn_8_7461.1	NA	NA	2
Lsat_1_v5_gn_8_75220.1	NA	4	NA
Lsat_1_v5_gn_8_76521.1	NA	NA	1
Lsat_1_v5_gn_8_78880.1	NA	4	NA
Lsat_1_v5_gn_8_78900.1	NA	4	NA
Lsat_1_v5_gn_8_79040.1	NA	4	NA
Lsat_1_v5_gn_9_119461.1	3	4	NA
Lsat_1_v5_gn_9_20420.1	0.5	NA	0
Lsat_1_v5_gn_9_37481.1	NA	4	NA
Lsat_1_v5_gn_9_70241.1	NA	NA	2
Lsat_1_v5_gn_9_7900.1	NA	NA	2