Single miRNA

Lsa-MIR393a

Basic info.

miRNA locus ID
Lsa-MIR393a

miRNA locus accession
PmiREN000000075

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_2 199176750 199176878 +

Comments
A member of family MIR393

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     T       C   A   C            C    T        A  -       T    TTTC
   GA GGTAGCT AAG AGG ATCCAAAGGGAT GCAT GATCCCAA TC TTATATG CGTG    
   || ||||||| ||| ||| |||||||||||| |||| |||||||| || ||||||| ||||     
   CT TCGTTGG TTC TCC TAGGTTTTCCTA TGTA CTAGGGTT AG GATGTAT GTAT    
GAA  -       T   C   T            C    -        A  C       -    GTGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_45201.1	1	2	0
Lsat_1_v5_gn_1_126900.1	2.5	NA	NA
Lsat_1_v5_gn_1_65541.1	NA	4	NA
Lsat_1_v5_gn_1_70060.1	3	NA	0
Lsat_1_v5_gn_2_102601.1	3	NA	NA
Lsat_1_v5_gn_2_2721.1	2.5	NA	NA
Lsat_1_v5_gn_4_49221.1	NA	NA	2
Lsat_1_v5_gn_4_68721.1	3	NA	NA
Lsat_1_v5_gn_5_188920.1	1	NA	0
Lsat_1_v5_gn_5_94401.1	NA	NA	2
Lsat_1_v5_gn_6_13521.1	NA	4	2
Lsat_1_v5_gn_7_19521.1	3	4	NA
Lsat_1_v5_gn_7_33601.1	2.5	4	NA
Lsat_1_v5_gn_7_97100.1	3	NA	NA
Lsat_1_v5_gn_8_2560.1	3	NA	NA
Lsat_1_v5_gn_8_2721.1	NA	NA	1
Lsat_1_v5_gn_8_54220.1	1	NA	0
Lsat_1_v5_gn_8_80261.1	2.5	NA	NA
Lsat_1_v5_gn_8_89141.1	3	NA	NA
Lsat_1_v5_gn_9_4820.1	1	NA	0