Single miRNA

Lsa-MIR393b

Basic info.

miRNA locus ID
Lsa-MIR393b

miRNA locus accession
PmiREN000000076

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_8 18182148 18182254 -

Comments
A member of family MIR393

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TATT  A   T     T              C    T            GTCG
      GT ACT AAGGA GAATCCAAAGGGAT GCAT GATCCTAAATTA    
      || ||| ||||| |||||||||||||| |||| ||||||||||||     
      CA TGG TTCCT CTTAGGTTTTCCTA CGTA CTAGGGTTTAGT    
AAGCTT  A   T     C              T    -            ATGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_45201.1	1	2	0
Lsat_1_v5_gn_1_126900.1	2.5	NA	NA
Lsat_1_v5_gn_1_65541.1	NA	4	NA
Lsat_1_v5_gn_1_70060.1	3	NA	NA
Lsat_1_v5_gn_2_102601.1	3	NA	NA
Lsat_1_v5_gn_2_2721.1	2.5	NA	NA
Lsat_1_v5_gn_3_43721.1	NA	NA	2
Lsat_1_v5_gn_4_160900.1	NA	NA	2
Lsat_1_v5_gn_4_49221.1	NA	NA	2
Lsat_1_v5_gn_4_68721.1	3	NA	NA
Lsat_1_v5_gn_5_188920.1	1	NA	0
Lsat_1_v5_gn_5_94401.1	NA	NA	2
Lsat_1_v5_gn_6_13521.1	NA	4	2
Lsat_1_v5_gn_7_11940.1	NA	NA	2
Lsat_1_v5_gn_7_19521.1	3	4	NA
Lsat_1_v5_gn_7_33601.1	2.5	4	NA
Lsat_1_v5_gn_7_97100.1	3	NA	NA
Lsat_1_v5_gn_8_2560.1	3	NA	NA
Lsat_1_v5_gn_8_2721.1	NA	NA	2
Lsat_1_v5_gn_8_54220.1	1	NA	2
Lsat_1_v5_gn_8_80261.1	2.5	NA	NA
Lsat_1_v5_gn_8_89141.1	3	NA	NA
Lsat_1_v5_gn_9_4820.1	1	NA	0