Single miRNA

Lsa-MIR394c

Basic info.

miRNA locus ID
Lsa-MIR394c

miRNA locus accession
PmiREN000000079

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_9 50667712 50667943 +

Comments
A member of family MIR394

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     TTT             -      TTC           ------   -        TCAAAACCAACGGCTGTAAGAGGGTATAGATATACGGAAAATACAAGAAACTTTGTACAT
 AGGG   CTAACAGAGTTCT TTGGCA   TGTCCACCTCC      CCT TTTATTTA                                                            
 ||||   ||||||||||||| ||||||   |||||||||||      ||| ||||||||                                                            C
 TCTC   GGTTGTCTTGAGG AACCGT   ACGGGTGGAGG      TGT TTTATTAT                                                            
T    TAT             T      CAT           TGGGGG   G        TTGGTGGTAGAGATAGAAGGAAGATAAGAATTGTGATCTGGGAGTAGTTGAAGTGCGAGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_7581.1	NA	4	NA
Lsat_1_v5_gn_1_118581.1	NA	4	NA
Lsat_1_v5_gn_1_280.1	NA	NA	2
Lsat_1_v5_gn_1_34800.1	NA	NA	2
Lsat_1_v5_gn_1_39541.1	NA	4	NA
Lsat_1_v5_gn_1_55341.1	NA	4	NA
Lsat_1_v5_gn_1_87300.1	NA	NA	2
Lsat_1_v5_gn_2_127000.1	NA	4	NA
Lsat_1_v5_gn_2_130560.1	NA	4	NA
Lsat_1_v5_gn_2_133400.1	NA	4	NA
Lsat_1_v5_gn_2_18980.1	NA	4	NA
Lsat_1_v5_gn_2_4780.1	NA	4	NA
Lsat_1_v5_gn_2_63641.1	3	NA	NA
Lsat_1_v5_gn_2_64041.1	NA	4	NA
Lsat_1_v5_gn_2_81541.1	NA	NA	2
Lsat_1_v5_gn_2_82001.1	NA	NA	2
Lsat_1_v5_gn_2_82341.1	NA	4	NA
Lsat_1_v5_gn_3_110960.1	NA	4	NA
Lsat_1_v5_gn_3_112861.1	NA	4	NA
Lsat_1_v5_gn_3_137080.1	NA	4	NA
Lsat_1_v5_gn_3_24581.1	NA	4	NA
Lsat_1_v5_gn_3_30801.1	1	2	0
Lsat_1_v5_gn_3_43740.1	NA	4	NA
Lsat_1_v5_gn_3_43761.1	NA	4	NA
Lsat_1_v5_gn_3_4620.1	NA	4	NA
Lsat_1_v5_gn_3_4640.1	NA	4	NA
Lsat_1_v5_gn_3_53200.1	NA	NA	2
Lsat_1_v5_gn_3_56401.1	NA	NA	2
Lsat_1_v5_gn_3_67981.1	2.5	NA	NA
Lsat_1_v5_gn_3_83360.1	NA	NA	2
Lsat_1_v5_gn_3_84540.1	NA	NA	2
Lsat_1_v5_gn_3_95120.1	NA	4	NA
Lsat_1_v5_gn_4_125760.1	NA	4	NA
Lsat_1_v5_gn_4_126480.1	NA	4	NA
Lsat_1_v5_gn_4_179580.1	NA	NA	2
Lsat_1_v5_gn_4_184321.1	NA	4	NA
Lsat_1_v5_gn_4_24360.1	NA	4	NA
Lsat_1_v5_gn_4_30280.1	NA	4	NA
Lsat_1_v5_gn_4_33741.1	NA	4	NA
Lsat_1_v5_gn_4_36221.1	NA	NA	2
Lsat_1_v5_gn_4_36401.1	NA	NA	2
Lsat_1_v5_gn_4_3980.1	NA	3	NA
Lsat_1_v5_gn_4_84680.1	NA	NA	2
Lsat_1_v5_gn_5_10720.1	NA	4	NA
Lsat_1_v5_gn_5_107861.1	NA	3	NA
Lsat_1_v5_gn_5_113800.1	NA	4	NA
Lsat_1_v5_gn_5_116201.1	NA	4	NA
Lsat_1_v5_gn_5_12001.1	NA	NA	2
Lsat_1_v5_gn_5_121881.1	NA	4	NA
Lsat_1_v5_gn_5_123180.1	NA	NA	2
Lsat_1_v5_gn_5_141221.1	NA	NA	2
Lsat_1_v5_gn_5_172860.1	NA	4	NA
Lsat_1_v5_gn_5_190040.1	NA	4	NA
Lsat_1_v5_gn_5_51041.1	NA	4	NA
Lsat_1_v5_gn_5_64980.1	NA	NA	2
Lsat_1_v5_gn_5_73041.1	2.5	NA	NA
Lsat_1_v5_gn_5_81101.1	NA	NA	2
Lsat_1_v5_gn_5_90980.1	NA	NA	2
Lsat_1_v5_gn_6_110501.1	2.5	3	2
Lsat_1_v5_gn_6_112720.1	NA	NA	2
Lsat_1_v5_gn_6_62021.1	NA	3	NA
Lsat_1_v5_gn_6_62041.1	NA	3	NA
Lsat_1_v5_gn_6_83581.1	NA	NA	2
Lsat_1_v5_gn_7_105700.1	NA	3	2
Lsat_1_v5_gn_7_109340.1	NA	4	NA
Lsat_1_v5_gn_7_114181.1	NA	4	NA
Lsat_1_v5_gn_7_16240.1	NA	4	NA
Lsat_1_v5_gn_7_42361.1	NA	NA	2
Lsat_1_v5_gn_7_47101.1	NA	4	NA
Lsat_1_v5_gn_7_69840.1	NA	4	NA
Lsat_1_v5_gn_7_74920.1	NA	4	NA
Lsat_1_v5_gn_7_87360.1	NA	3	NA
Lsat_1_v5_gn_8_123101.1	NA	NA	2
Lsat_1_v5_gn_8_124000.1	NA	NA	2
Lsat_1_v5_gn_8_141900.1	NA	NA	2
Lsat_1_v5_gn_8_147861.1	1	2	0
Lsat_1_v5_gn_8_15080.1	NA	NA	2
Lsat_1_v5_gn_8_153700.1	NA	NA	2
Lsat_1_v5_gn_8_62421.1	NA	4	NA
Lsat_1_v5_gn_8_95001.1	NA	4	NA
Lsat_1_v5_gn_9_10560.1	NA	4	NA
Lsat_1_v5_gn_9_107080.1	NA	4	NA
Lsat_1_v5_gn_9_11040.1	NA	4	2
Lsat_1_v5_gn_9_11520.1	NA	4	NA
Lsat_1_v5_gn_9_119760.1	NA	4	NA
Lsat_1_v5_gn_9_24181.1	NA	4	NA
Lsat_1_v5_gn_9_29020.1	NA	NA	2
Lsat_1_v5_gn_9_29121.1	NA	NA	2
Lsat_1_v5_gn_9_33161.1	NA	4	NA
Lsat_1_v5_gn_9_33260.1	NA	4	NA
Lsat_1_v5_gn_9_33601.1	NA	4	NA
Lsat_1_v5_gn_9_43360.1	3	NA	NA
Lsat_1_v5_gn_9_50160.1	NA	4	NA
Lsat_1_v5_gn_9_67980.1	NA	4	NA
Lsat_1_v5_gn_9_6821.1	NA	4	NA
Lsat_1_v5_gn_9_70241.1	NA	NA	2
Lsat_1_v5_gn_9_70641.1	NA	4	NA
Lsat_1_v5_gn_9_921.1	3	NA	NA