Single miRNA

Lsa-MIR396e

Basic info.

miRNA locus ID
Lsa-MIR396e

miRNA locus accession
PmiREN000000083

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 206731190 206731349 -

Comments
A member of family MIR396

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AA      -   ---        C                      -CA     C  AA  T      TTTTTC T      TCT
  GTCCTG AGA   GTCATATT TTCCACAGCTTTCTTGAACTTT   TAGTT TC  GA TTCTCA      G GAATTT   
  |||||| |||   |||||||| ||||||||||||||||||||||   ||||| ||  || ||||||      | ||||||   T
  TAGGGC TCT   CAGTATAA AGGGTGTTGAAAGAACTTGAAG   ATTAA AG  CT AAGAGT      C CTTAGG   
        A   TAA        A                      CAA     T  -A  T      --TTTT -      TTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_11921.1	NA	4	NA
Lsat_1_v5_gn_0_21360.1	NA	4	NA
Lsat_1_v5_gn_0_41560.1	NA	NA	2
Lsat_1_v5_gn_1_110001.1	NA	NA	2
Lsat_1_v5_gn_1_128940.1	NA	4	NA
Lsat_1_v5_gn_1_17180.1	NA	4	NA
Lsat_1_v5_gn_1_19661.1	NA	3	NA
Lsat_1_v5_gn_1_22260.1	NA	4	2
Lsat_1_v5_gn_1_22340.1	NA	4	NA
Lsat_1_v5_gn_1_22601.1	NA	NA	2
Lsat_1_v5_gn_1_22801.1	NA	4	NA
Lsat_1_v5_gn_1_25581.1	NA	NA	2
Lsat_1_v5_gn_1_29100.1	NA	NA	2
Lsat_1_v5_gn_1_32360.1	NA	4	NA
Lsat_1_v5_gn_1_36801.1	NA	4	NA
Lsat_1_v5_gn_1_41000.1	NA	3	2
Lsat_1_v5_gn_1_48220.1	NA	4	NA
Lsat_1_v5_gn_1_49141.1	2.5	3	2
Lsat_1_v5_gn_1_52601.1	NA	4	NA
Lsat_1_v5_gn_1_55981.1	NA	4	NA
Lsat_1_v5_gn_1_69561.1	NA	3	NA
Lsat_1_v5_gn_1_83120.1	3	NA	NA
Lsat_1_v5_gn_2_109661.1	3	NA	NA
Lsat_1_v5_gn_2_112300.1	NA	NA	2
Lsat_1_v5_gn_2_12640.1	2.5	NA	NA
Lsat_1_v5_gn_2_131821.1	NA	NA	2
Lsat_1_v5_gn_2_135541.1	3	2	0
Lsat_1_v5_gn_2_136101.1	NA	4	NA
Lsat_1_v5_gn_2_14581.1	3	NA	NA
Lsat_1_v5_gn_2_19960.1	NA	NA	2
Lsat_1_v5_gn_2_25501.1	NA	3	NA
Lsat_1_v5_gn_2_46601.1	NA	4	NA
Lsat_1_v5_gn_2_54100.1	NA	4	NA
Lsat_1_v5_gn_2_72221.1	NA	NA	2
Lsat_1_v5_gn_2_75740.1	3	3	NA
Lsat_1_v5_gn_2_79081.1	NA	4	NA
Lsat_1_v5_gn_2_79161.1	NA	4	NA
Lsat_1_v5_gn_2_86661.1	NA	NA	1
Lsat_1_v5_gn_2_91041.1	NA	NA	2
Lsat_1_v5_gn_3_100041.1	3	NA	NA
Lsat_1_v5_gn_3_11501.1	NA	NA	2
Lsat_1_v5_gn_3_117720.1	NA	NA	1
Lsat_1_v5_gn_3_133500.1	3	2	0
Lsat_1_v5_gn_3_13681.1	NA	NA	2
Lsat_1_v5_gn_3_140821.1	NA	NA	2
Lsat_1_v5_gn_3_14660.1	3	2	NA
Lsat_1_v5_gn_3_18221.1	NA	4	NA
Lsat_1_v5_gn_3_25221.1	NA	4	NA
Lsat_1_v5_gn_3_32661.1	NA	NA	2
Lsat_1_v5_gn_3_34521.1	NA	NA	2
Lsat_1_v5_gn_3_41481.1	NA	NA	0
Lsat_1_v5_gn_3_44121.1	NA	NA	2
Lsat_1_v5_gn_3_45921.1	NA	NA	2
Lsat_1_v5_gn_3_70541.1	NA	4	NA
Lsat_1_v5_gn_3_7360.1	NA	NA	2
Lsat_1_v5_gn_3_75961.1	NA	NA	2
Lsat_1_v5_gn_3_80541.1	NA	4	NA
Lsat_1_v5_gn_3_85521.1	3	2	0
Lsat_1_v5_gn_3_90240.1	NA	NA	2
Lsat_1_v5_gn_4_111840.1	NA	3	NA
Lsat_1_v5_gn_4_123560.1	NA	3	NA
Lsat_1_v5_gn_4_135580.1	3	3	2
Lsat_1_v5_gn_4_13761.1	NA	NA	2
Lsat_1_v5_gn_4_153581.1	NA	4	NA
Lsat_1_v5_gn_4_159961.1	3	2	NA
Lsat_1_v5_gn_4_165541.1	NA	NA	2
Lsat_1_v5_gn_4_18660.1	NA	NA	2
Lsat_1_v5_gn_4_31761.1	NA	NA	2
Lsat_1_v5_gn_4_46420.1	2.5	3	NA
Lsat_1_v5_gn_4_50741.1	NA	4	NA
Lsat_1_v5_gn_4_56781.1	NA	4	NA
Lsat_1_v5_gn_4_60040.1	NA	4	NA
Lsat_1_v5_gn_4_61921.1	NA	NA	2
Lsat_1_v5_gn_4_67320.1	3	4	NA
Lsat_1_v5_gn_4_75160.1	NA	NA	2
Lsat_1_v5_gn_4_80320.1	NA	NA	2
Lsat_1_v5_gn_4_92941.1	3	2	NA
Lsat_1_v5_gn_5_110740.1	NA	4	NA
Lsat_1_v5_gn_5_116360.1	3	NA	NA
Lsat_1_v5_gn_5_119461.1	NA	NA	2
Lsat_1_v5_gn_5_136241.1	NA	4	NA
Lsat_1_v5_gn_5_13660.1	NA	4	2
Lsat_1_v5_gn_5_139760.1	2.5	NA	NA
Lsat_1_v5_gn_5_141200.1	3	NA	0
Lsat_1_v5_gn_5_144900.1	NA	NA	2
Lsat_1_v5_gn_5_146360.1	NA	NA	2
Lsat_1_v5_gn_5_147281.1	NA	4	NA
Lsat_1_v5_gn_5_153560.1	NA	4	NA
Lsat_1_v5_gn_5_161641.1	NA	NA	2
Lsat_1_v5_gn_5_163761.1	NA	3	NA
Lsat_1_v5_gn_5_165801.1	NA	4	NA
Lsat_1_v5_gn_5_174140.1	NA	4	NA
Lsat_1_v5_gn_5_17560.1	NA	4	NA
Lsat_1_v5_gn_5_179300.1	NA	NA	2
Lsat_1_v5_gn_5_184280.1	NA	4	NA
Lsat_1_v5_gn_5_55801.1	NA	4	NA
Lsat_1_v5_gn_5_55861.1	NA	4	NA
Lsat_1_v5_gn_5_72841.1	2	NA	NA
Lsat_1_v5_gn_5_79241.1	3	3	NA
Lsat_1_v5_gn_5_89061.1	NA	4	NA
Lsat_1_v5_gn_5_90540.1	NA	4	NA
Lsat_1_v5_gn_5_92700.1	NA	NA	2
Lsat_1_v5_gn_6_101321.1	NA	NA	2
Lsat_1_v5_gn_6_103160.1	NA	3	NA
Lsat_1_v5_gn_6_103341.1	NA	NA	2
Lsat_1_v5_gn_6_106760.1	NA	NA	2
Lsat_1_v5_gn_6_10680.1	NA	3	0
Lsat_1_v5_gn_6_110001.1	NA	NA	2
Lsat_1_v5_gn_6_111781.1	3	NA	NA
Lsat_1_v5_gn_6_112221.1	NA	NA	2
Lsat_1_v5_gn_6_15860.1	NA	4	NA
Lsat_1_v5_gn_6_16960.1	NA	4	NA
Lsat_1_v5_gn_6_17460.1	3	2	NA
Lsat_1_v5_gn_6_18120.1	2	NA	NA
Lsat_1_v5_gn_6_23561.1	3	3	NA
Lsat_1_v5_gn_6_38640.1	3	4	NA
Lsat_1_v5_gn_6_46361.1	3	NA	NA
Lsat_1_v5_gn_6_50460.1	2.5	3	NA
Lsat_1_v5_gn_6_53240.1	NA	4	NA
Lsat_1_v5_gn_6_70601.1	3	2	0
Lsat_1_v5_gn_6_75441.1	3	2	NA
Lsat_1_v5_gn_6_80561.1	NA	4	NA
Lsat_1_v5_gn_6_81681.1	NA	2	NA
Lsat_1_v5_gn_6_90321.1	NA	4	NA
Lsat_1_v5_gn_7_103661.1	NA	NA	2
Lsat_1_v5_gn_7_15820.1	NA	NA	2
Lsat_1_v5_gn_7_18961.1	NA	NA	2
Lsat_1_v5_gn_7_20480.1	3	NA	0
Lsat_1_v5_gn_7_24081.1	NA	4	NA
Lsat_1_v5_gn_7_27661.1	NA	NA	2
Lsat_1_v5_gn_7_42460.1	3	NA	NA
Lsat_1_v5_gn_7_65181.1	NA	3	2
Lsat_1_v5_gn_7_73160.1	NA	NA	2
Lsat_1_v5_gn_7_76780.1	NA	4	NA
Lsat_1_v5_gn_7_7681.1	NA	NA	2
Lsat_1_v5_gn_7_86481.1	3	3	NA
Lsat_1_v5_gn_7_87800.1	NA	4	2
Lsat_1_v5_gn_7_89080.1	NA	NA	2
Lsat_1_v5_gn_7_97980.1	NA	4	NA
Lsat_1_v5_gn_8_101580.1	2.5	NA	NA
Lsat_1_v5_gn_8_124000.1	NA	NA	2
Lsat_1_v5_gn_8_125940.1	3	NA	2
Lsat_1_v5_gn_8_127960.1	NA	NA	1
Lsat_1_v5_gn_8_137601.1	NA	NA	2
Lsat_1_v5_gn_8_137620.1	3	NA	NA
Lsat_1_v5_gn_8_138961.1	NA	4	NA
Lsat_1_v5_gn_8_141960.1	NA	4	NA
Lsat_1_v5_gn_8_14841.1	NA	NA	2
Lsat_1_v5_gn_8_152860.1	NA	NA	2
Lsat_1_v5_gn_8_152961.1	NA	NA	2
Lsat_1_v5_gn_8_157520.1	NA	NA	2
Lsat_1_v5_gn_8_23321.1	NA	NA	2
Lsat_1_v5_gn_8_24760.1	NA	4	NA
Lsat_1_v5_gn_8_64200.1	NA	4	NA
Lsat_1_v5_gn_8_71281.1	NA	4	NA
Lsat_1_v5_gn_8_86361.1	3	2	1
Lsat_1_v5_gn_8_93401.1	NA	4	NA
Lsat_1_v5_gn_8_97621.1	NA	NA	2
Lsat_1_v5_gn_9_10100.1	NA	NA	2
Lsat_1_v5_gn_9_103361.1	NA	NA	2
Lsat_1_v5_gn_9_107220.1	NA	NA	1
Lsat_1_v5_gn_9_108920.1	NA	NA	2
Lsat_1_v5_gn_9_114080.1	2.5	3	2
Lsat_1_v5_gn_9_121240.1	NA	NA	2
Lsat_1_v5_gn_9_122000.1	2.5	3	NA
Lsat_1_v5_gn_9_123140.1	2.5	NA	NA
Lsat_1_v5_gn_9_27420.1	NA	4	2
Lsat_1_v5_gn_9_27861.1	NA	4	NA
Lsat_1_v5_gn_9_28200.1	NA	NA	2
Lsat_1_v5_gn_9_54581.1	NA	4	NA
Lsat_1_v5_gn_9_55320.1	NA	NA	0
Lsat_1_v5_gn_9_61640.1	NA	NA	2
Lsat_1_v5_gn_9_63600.1	NA	4	2
Lsat_1_v5_gn_9_63660.1	NA	4	2
Lsat_1_v5_gn_9_64461.1	NA	4	NA
Lsat_1_v5_gn_9_64801.1	NA	NA	2
Lsat_1_v5_gn_9_64821.1	NA	NA	2
Lsat_1_v5_gn_9_65760.1	NA	NA	2
Lsat_1_v5_gn_9_77480.1	NA	4	NA
Lsat_1_v5_gn_9_78540.1	3	2	NA
Lsat_1_v5_gn_9_80260.1	NA	4	NA
Lsat_1_v5_gn_9_8201.1	NA	NA	2
Lsat_1_v5_gn_9_82641.1	3	NA	NA
Lsat_1_v5_gn_9_8420.1	NA	4	NA