Single miRNA

Lsa-MIR396a

Basic info.

miRNA locus ID
Lsa-MIR396a

miRNA locus accession
PmiREN000000084

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_7 61642007 61642136 +

Comments
A member of family MIR396

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AAA     C          C            C          T      T   C  CTC    T
     TGGTG TCTTTCTATT TTCCACGGCTTT TTGAACTGCA GGGTTT GAT TA   GATC 
     ||||| |||||||||| |||||||||||| |||||||||| |||||| ||| ||   |||| T
     ACTAC AGAGAGATAG AGGGTGTCGAAA AACTTGGCGT TCTAAA CTA AT   TTGG 
CCATA     A          A            T          T      -   T  --T    T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_11921.1	NA	4	NA
Lsat_1_v5_gn_1_19661.1	NA	4	2
Lsat_1_v5_gn_1_26421.1	NA	NA	2
Lsat_1_v5_gn_1_4460.1	NA	NA	2
Lsat_1_v5_gn_1_49141.1	3	4	NA
Lsat_1_v5_gn_1_50200.1	NA	NA	2
Lsat_1_v5_gn_1_76180.1	3	NA	NA
Lsat_1_v5_gn_2_107721.1	3	NA	NA
Lsat_1_v5_gn_2_119701.1	NA	NA	2
Lsat_1_v5_gn_2_12640.1	3	NA	NA
Lsat_1_v5_gn_2_128901.1	NA	NA	2
Lsat_1_v5_gn_2_130100.1	3	NA	2
Lsat_1_v5_gn_2_134301.1	NA	4	NA
Lsat_1_v5_gn_2_135541.1	NA	4	NA
Lsat_1_v5_gn_2_58980.1	NA	4	2
Lsat_1_v5_gn_2_61341.1	NA	4	NA
Lsat_1_v5_gn_2_61861.1	NA	4	NA
Lsat_1_v5_gn_2_62960.1	3	NA	NA
Lsat_1_v5_gn_2_75740.1	NA	4	NA
Lsat_1_v5_gn_3_133500.1	3	3	0
Lsat_1_v5_gn_3_14660.1	3	3	0
Lsat_1_v5_gn_3_21560.1	NA	NA	2
Lsat_1_v5_gn_3_29420.1	NA	NA	2
Lsat_1_v5_gn_3_33321.1	2.5	NA	NA
Lsat_1_v5_gn_3_35120.1	3	NA	2
Lsat_1_v5_gn_3_85521.1	NA	3	NA
Lsat_1_v5_gn_3_90340.1	NA	NA	2
Lsat_1_v5_gn_4_111840.1	NA	4	NA
Lsat_1_v5_gn_4_14360.1	NA	NA	2
Lsat_1_v5_gn_4_153581.1	NA	4	NA
Lsat_1_v5_gn_4_159961.1	3	3	0
Lsat_1_v5_gn_4_162180.1	NA	NA	2
Lsat_1_v5_gn_4_175061.1	NA	NA	2
Lsat_1_v5_gn_4_176020.1	NA	NA	2
Lsat_1_v5_gn_4_180801.1	NA	NA	2
Lsat_1_v5_gn_4_185640.1	NA	NA	2
Lsat_1_v5_gn_4_46420.1	3	4	NA
Lsat_1_v5_gn_4_56781.1	3	3	NA
Lsat_1_v5_gn_4_60120.1	NA	3	NA
Lsat_1_v5_gn_4_68641.1	3	4	NA
Lsat_1_v5_gn_4_74580.1	NA	NA	2
Lsat_1_v5_gn_4_92941.1	3	3	0
Lsat_1_v5_gn_5_124321.1	NA	4	NA
Lsat_1_v5_gn_5_136301.1	NA	4	NA
Lsat_1_v5_gn_5_139760.1	3	NA	NA
Lsat_1_v5_gn_5_141200.1	3	NA	0
Lsat_1_v5_gn_5_148881.1	NA	NA	2
Lsat_1_v5_gn_5_165241.1	3	4	NA
Lsat_1_v5_gn_5_169160.1	3	4	NA
Lsat_1_v5_gn_5_2560.1	NA	NA	2
Lsat_1_v5_gn_5_72841.1	2.5	NA	NA
Lsat_1_v5_gn_5_79241.1	NA	4	NA
Lsat_1_v5_gn_5_87280.1	NA	NA	2
Lsat_1_v5_gn_5_93661.1	NA	NA	2
Lsat_1_v5_gn_6_103160.1	NA	3	NA
Lsat_1_v5_gn_6_17460.1	3	3	0
Lsat_1_v5_gn_6_18120.1	2.5	NA	NA
Lsat_1_v5_gn_6_23561.1	NA	4	NA
Lsat_1_v5_gn_6_32601.1	NA	4	NA
Lsat_1_v5_gn_6_50460.1	3	4	NA
Lsat_1_v5_gn_6_70601.1	3	3	0
Lsat_1_v5_gn_6_75320.1	NA	4	NA
Lsat_1_v5_gn_6_75441.1	3	3	0
Lsat_1_v5_gn_6_81681.1	NA	3	0
Lsat_1_v5_gn_7_1480.1	NA	NA	2
Lsat_1_v5_gn_7_86481.1	NA	4	NA
Lsat_1_v5_gn_8_101580.1	3	NA	NA
Lsat_1_v5_gn_8_161820.1	NA	NA	2
Lsat_1_v5_gn_8_33100.1	NA	NA	2
Lsat_1_v5_gn_8_57160.1	NA	4	NA
Lsat_1_v5_gn_8_71281.1	NA	4	NA
Lsat_1_v5_gn_8_72880.1	NA	NA	2
Lsat_1_v5_gn_8_86361.1	3	3	0
Lsat_1_v5_gn_9_114080.1	3	4	2
Lsat_1_v5_gn_9_121061.1	NA	NA	2
Lsat_1_v5_gn_9_122000.1	3	4	NA
Lsat_1_v5_gn_9_123140.1	3	NA	NA
Lsat_1_v5_gn_9_39720.1	NA	NA	2
Lsat_1_v5_gn_9_78540.1	3	3	0