Single miRNA

Lsa-MIR396c

Basic info.

miRNA locus ID
Lsa-MIR396c

miRNA locus accession
PmiREN000000086

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_8 85457505 85457633 -

Comments
A member of family MIR396

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GAC    G           C            C         -TT  G TTA  TTT     CT
     TGGT CTTTTTCTGTT TTCCACAGCTTT TTGAACTGC   AT G   TC   TAGAT  
     |||| ||||||||||| |||||||||||| |||||||||   || |   ||   |||||   
     ACTA GAAAGAGACAG AGGGTGTCGAAA AACTTGGCG   TA C   AG   ATCTG  
ACCCC    G           A            T         TTC  G TTG  TTT     TC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_11921.1	NA	4	NA
Lsat_1_v5_gn_1_128940.1	NA	4	NA
Lsat_1_v5_gn_1_19661.1	NA	4	NA
Lsat_1_v5_gn_1_22260.1	NA	4	NA
Lsat_1_v5_gn_1_22340.1	NA	4	NA
Lsat_1_v5_gn_1_32360.1	NA	4	NA
Lsat_1_v5_gn_1_36801.1	NA	4	NA
Lsat_1_v5_gn_1_41000.1	NA	4	NA
Lsat_1_v5_gn_1_49141.1	2.5	3	NA
Lsat_1_v5_gn_1_49660.1	NA	4	NA
Lsat_1_v5_gn_1_63021.1	NA	4	NA
Lsat_1_v5_gn_1_69561.1	NA	4	NA
Lsat_1_v5_gn_1_83120.1	3	NA	0
Lsat_1_v5_gn_2_109661.1	3	NA	NA
Lsat_1_v5_gn_2_125401.1	NA	NA	2
Lsat_1_v5_gn_2_12640.1	2.5	NA	NA
Lsat_1_v5_gn_2_135541.1	3	3	NA
Lsat_1_v5_gn_2_14581.1	3	NA	NA
Lsat_1_v5_gn_2_1901.1	NA	NA	2
Lsat_1_v5_gn_2_25501.1	NA	4	NA
Lsat_1_v5_gn_2_54100.1	NA	4	NA
Lsat_1_v5_gn_2_65020.1	NA	NA	2
Lsat_1_v5_gn_2_75740.1	3	3	NA
Lsat_1_v5_gn_3_100041.1	3	NA	NA
Lsat_1_v5_gn_3_133500.1	3	3	NA
Lsat_1_v5_gn_3_140821.1	NA	NA	2
Lsat_1_v5_gn_3_14660.1	3	3	NA
Lsat_1_v5_gn_3_18221.1	NA	4	NA
Lsat_1_v5_gn_3_25221.1	NA	4	0
Lsat_1_v5_gn_3_70541.1	NA	4	NA
Lsat_1_v5_gn_3_80541.1	NA	4	NA
Lsat_1_v5_gn_3_85521.1	3	3	0
Lsat_1_v5_gn_3_98660.1	NA	4	NA
Lsat_1_v5_gn_4_111840.1	NA	3	NA
Lsat_1_v5_gn_4_123560.1	NA	4	NA
Lsat_1_v5_gn_4_135580.1	3	4	NA
Lsat_1_v5_gn_4_159961.1	3	3	0
Lsat_1_v5_gn_4_161160.1	NA	4	NA
Lsat_1_v5_gn_4_46420.1	2.5	3	NA
Lsat_1_v5_gn_4_50741.1	NA	4	NA
Lsat_1_v5_gn_4_63201.1	NA	4	NA
Lsat_1_v5_gn_4_67320.1	3	4	NA
Lsat_1_v5_gn_4_90461.1	NA	4	NA
Lsat_1_v5_gn_4_92941.1	3	3	NA
Lsat_1_v5_gn_5_116360.1	3	NA	NA
Lsat_1_v5_gn_5_136241.1	NA	4	NA
Lsat_1_v5_gn_5_13660.1	NA	4	NA
Lsat_1_v5_gn_5_139760.1	2.5	NA	NA
Lsat_1_v5_gn_5_141200.1	3	NA	NA
Lsat_1_v5_gn_5_147281.1	NA	4	NA
Lsat_1_v5_gn_5_153560.1	NA	4	NA
Lsat_1_v5_gn_5_165801.1	NA	4	NA
Lsat_1_v5_gn_5_167880.1	NA	4	NA
Lsat_1_v5_gn_5_17560.1	NA	4	NA
Lsat_1_v5_gn_5_55801.1	NA	4	NA
Lsat_1_v5_gn_5_55861.1	NA	4	NA
Lsat_1_v5_gn_5_72841.1	2	NA	0
Lsat_1_v5_gn_5_79241.1	3	3	NA
Lsat_1_v5_gn_5_90540.1	NA	4	NA
Lsat_1_v5_gn_6_103160.1	NA	3	NA
Lsat_1_v5_gn_6_10680.1	NA	4	NA
Lsat_1_v5_gn_6_111781.1	3	NA	NA
Lsat_1_v5_gn_6_15860.1	NA	4	NA
Lsat_1_v5_gn_6_17460.1	3	3	NA
Lsat_1_v5_gn_6_18120.1	2	NA	2
Lsat_1_v5_gn_6_23561.1	3	3	NA
Lsat_1_v5_gn_6_38640.1	3	4	NA
Lsat_1_v5_gn_6_46361.1	3	NA	NA
Lsat_1_v5_gn_6_50460.1	2.5	3	NA
Lsat_1_v5_gn_6_58161.1	NA	NA	2
Lsat_1_v5_gn_6_65880.1	NA	NA	1
Lsat_1_v5_gn_6_70601.1	3	3	NA
Lsat_1_v5_gn_6_75320.1	NA	4	NA
Lsat_1_v5_gn_6_75441.1	3	3	NA
Lsat_1_v5_gn_6_81681.1	NA	3	NA
Lsat_1_v5_gn_6_90321.1	NA	4	2
Lsat_1_v5_gn_7_20480.1	3	NA	NA
Lsat_1_v5_gn_7_24081.1	NA	4	NA
Lsat_1_v5_gn_7_42460.1	3	NA	NA
Lsat_1_v5_gn_7_65181.1	NA	4	NA
Lsat_1_v5_gn_7_76780.1	NA	4	NA
Lsat_1_v5_gn_7_86481.1	3	3	NA
Lsat_1_v5_gn_7_97980.1	NA	4	NA
Lsat_1_v5_gn_8_101580.1	2.5	NA	NA
Lsat_1_v5_gn_8_125940.1	3	NA	NA
Lsat_1_v5_gn_8_137620.1	3	NA	NA
Lsat_1_v5_gn_8_141960.1	NA	4	NA
Lsat_1_v5_gn_8_64200.1	NA	4	NA
Lsat_1_v5_gn_8_71281.1	NA	4	NA
Lsat_1_v5_gn_8_75000.1	NA	4	NA
Lsat_1_v5_gn_8_75100.1	NA	4	NA
Lsat_1_v5_gn_8_86361.1	3	3	NA
Lsat_1_v5_gn_8_93401.1	NA	4	NA
Lsat_1_v5_gn_8_94540.1	NA	4	NA
Lsat_1_v5_gn_9_114080.1	2.5	3	NA
Lsat_1_v5_gn_9_120921.1	NA	NA	2
Lsat_1_v5_gn_9_122000.1	2.5	4	NA
Lsat_1_v5_gn_9_123140.1	2.5	NA	NA
Lsat_1_v5_gn_9_27420.1	NA	4	NA
Lsat_1_v5_gn_9_27861.1	NA	4	NA
Lsat_1_v5_gn_9_45381.1	NA	NA	2
Lsat_1_v5_gn_9_77480.1	NA	4	NA
Lsat_1_v5_gn_9_78540.1	3	3	NA
Lsat_1_v5_gn_9_80260.1	NA	4	NA
Lsat_1_v5_gn_9_82641.1	3	NA	NA