Single miRNA

Lsa-MIR397

Basic info.

miRNA locus ID
Lsa-MIR397

miRNA locus accession
PmiREN000000087

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_9 150708535 150708644 +

Comments
A member of family MIR397

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TAT     ---             C           C         TCTCA     AA
   TCAGA   GAACTTAAAACGT ATTGAGTGCAG GTTGATGAA     GCTGT  
   |||||   ||||||||||||| ||||||||||| |||||||||     |||||  A
   AGTCT   CTTGAGTTTTGTA TAACTCACGTC CAACTGCTT     TGGCA  
 AT     TTT             T           C         ---TG     CT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_43720.1	3	NA	NA
Lsat_1_v5_gn_1_47281.1	NA	4	NA
Lsat_1_v5_gn_1_84160.1	NA	NA	2
Lsat_1_v5_gn_2_125460.1	NA	NA	2
Lsat_1_v5_gn_2_128840.1	NA	NA	2
Lsat_1_v5_gn_2_136060.1	NA	NA	2
Lsat_1_v5_gn_2_27520.1	NA	NA	2
Lsat_1_v5_gn_2_85620.1	NA	NA	2
Lsat_1_v5_gn_3_10761.1	NA	NA	2
Lsat_1_v5_gn_3_76141.1	1.5	NA	2
Lsat_1_v5_gn_3_76181.1	1.5	2	NA
Lsat_1_v5_gn_4_12860.1	NA	NA	2
Lsat_1_v5_gn_4_137221.1	NA	4	NA
Lsat_1_v5_gn_4_165041.1	2	NA	NA
Lsat_1_v5_gn_4_175061.1	NA	NA	1
Lsat_1_v5_gn_4_28981.1	NA	4	2
Lsat_1_v5_gn_4_61320.1	NA	4	NA
Lsat_1_v5_gn_4_69821.1	NA	NA	2
Lsat_1_v5_gn_5_107741.1	NA	4	NA
Lsat_1_v5_gn_5_118620.1	2.5	3	NA
Lsat_1_v5_gn_5_149101.1	3	NA	NA
Lsat_1_v5_gn_5_149121.1	3	NA	NA
Lsat_1_v5_gn_5_152961.1	1.5	2	NA
Lsat_1_v5_gn_5_158001.1	3	NA	NA
Lsat_1_v5_gn_5_164260.1	NA	4	NA
Lsat_1_v5_gn_5_169160.1	NA	NA	2
Lsat_1_v5_gn_5_173681.1	1.5	2	NA
Lsat_1_v5_gn_5_184680.1	NA	4	NA
Lsat_1_v5_gn_5_35501.1	3	NA	NA
Lsat_1_v5_gn_5_48440.1	NA	NA	2
Lsat_1_v5_gn_5_71000.1	1.5	2	0
Lsat_1_v5_gn_5_71020.1	1.5	2	NA
Lsat_1_v5_gn_5_75101.1	NA	4	NA
Lsat_1_v5_gn_6_103081.1	NA	NA	2
Lsat_1_v5_gn_6_15681.1	2	3	NA
Lsat_1_v5_gn_6_26180.1	NA	4	NA
Lsat_1_v5_gn_7_42081.1	NA	NA	2
Lsat_1_v5_gn_7_89801.1	NA	NA	2
Lsat_1_v5_gn_7_9441.1	NA	4	NA
Lsat_1_v5_gn_8_12380.1	2	3	NA
Lsat_1_v5_gn_8_124940.1	3	NA	NA
Lsat_1_v5_gn_8_136860.1	2.5	NA	NA
Lsat_1_v5_gn_8_140280.1	2.5	NA	NA
Lsat_1_v5_gn_8_144901.1	NA	NA	2
Lsat_1_v5_gn_8_164400.1	NA	NA	2
Lsat_1_v5_gn_8_65560.1	3	NA	NA
Lsat_1_v5_gn_8_71281.1	NA	4	NA
Lsat_1_v5_gn_8_73240.1	2	3	NA
Lsat_1_v5_gn_9_14760.1	2	2	NA
Lsat_1_v5_gn_9_17540.1	3	NA	NA
Lsat_1_v5_gn_9_17580.1	3	NA	NA
Lsat_1_v5_gn_9_17620.1	2.5	NA	NA
Lsat_1_v5_gn_9_17680.1	3	NA	NA
Lsat_1_v5_gn_9_18180.1	2	2	NA
Lsat_1_v5_gn_9_24380.1	2.5	4	0
Lsat_1_v5_gn_9_24560.1	2	2	0
Lsat_1_v5_gn_9_24581.1	2	2	0
Lsat_1_v5_gn_9_25840.1	1.5	2	NA
Lsat_1_v5_gn_9_33140.1	2	3	NA
Lsat_1_v5_gn_9_34320.1	2	3	NA
Lsat_1_v5_gn_9_36021.1	0.5	NA	0
Lsat_1_v5_gn_9_52781.1	2.5	NA	NA