Lsa-MIR398a

Basic info.

• miRNA locus ID
• Lsa-MIR398a

• miRNA locus accession
• PmiREN000000088

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_4  16893819  16894000  -

• Comments
• A member of family MIR398

• Confidence level
• 

Secondary strurture and sequence

          A   CATAA     T   A     A  A        T    T  AATTGCTATCTCCAC     ATTCATATG     CAGTACAAATTTTCGATGC
      AACA GGG     CTCCA AGG GTGAC CT AGAACACA ATGG TG               TGCAT         TTGTA                   
      |||| |||     ||||| ||| ||||| || |||||||| |||| ||               |||||         |||||                    
      TTGT CCC     GAGGT TCC CACTG GA TCTTGTGT TACC AC               GTGTG         TTACA                   
TTTCCT    -   ---AC     T   C     -  C        T    T  ------------CAA     ---------     GAGTGTTTGTTGACATACA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]