Single miRNA

Lsa-MIR399a

Basic info.

miRNA locus ID
Lsa-MIR399a

miRNA locus accession
PmiREN000000093

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_2 209987362 209987488 -

Comments
A member of family MIR399

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 ATC      -  T      A   A T       A          TATT   AATAT      C
    AAGCGA AA CAGTTA AGG C ACTTTCT TTGGCATATT    TAA     GTAATC 
    |||||| || |||||| ||| | ||||||| ||||||||||    |||     |||||| A
    TTCGTT TT GTCAAT TCC G TGAGAGG AACCGTATAG    ATT     TATTAG 
TATA      A  T      G   C T       A          TATT   CTGAT      T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_39140.1	3	NA	NA
Lsat_1_v5_gn_0_43161.1	3	NA	NA
Lsat_1_v5_gn_1_44581.1	NA	4	NA
Lsat_1_v5_gn_1_52320.1	NA	3	NA
Lsat_1_v5_gn_1_71481.1	NA	NA	2
Lsat_1_v5_gn_2_10121.1	NA	4	NA
Lsat_1_v5_gn_4_183040.1	NA	4	NA
Lsat_1_v5_gn_4_53041.1	1.5	NA	2
Lsat_1_v5_gn_4_85600.1	3	NA	NA
Lsat_1_v5_gn_5_177181.1	NA	3	NA
Lsat_1_v5_gn_6_39480.1	3	NA	NA
Lsat_1_v5_gn_6_70500.1	2.5	NA	NA
Lsat_1_v5_gn_7_31021.1	NA	NA	2
Lsat_1_v5_gn_7_34841.1	NA	4	NA
Lsat_1_v5_gn_8_12380.1	NA	4	NA
Lsat_1_v5_gn_8_138620.1	3	NA	NA
Lsat_1_v5_gn_8_140801.1	2.5	NA	NA
Lsat_1_v5_gn_8_20501.1	NA	4	2
Lsat_1_v5_gn_8_66261.1	NA	4	NA
Lsat_1_v5_gn_9_25220.1	NA	4	NA
Lsat_1_v5_gn_9_88621.1	NA	4	NA