Lsa-MIR399b

Basic info.

• miRNA locus ID
• Lsa-MIR399b

• miRNA locus accession
• PmiREN000000094

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_6  145155917  145156062  +

• Comments
• A member of family MIR400

• Confidence level
• 

Secondary strurture and sequence

  TCA           AT         T       C       AAACCCTAATT        CAT    G  TG
     TAAGCGAACTA  TGCAGGGCG CTCTCCT TGGCAGA           AATTTTCC   TGTC AA  
     |||||||||||  ||||||||| ||||||| |||||||           ||||||||   |||| ||  A
     ATTCGTTTGGT  ATGTCCCGT GAGAGGA ACCGTTT           TTAGAAGG   ATAG TT  
AGCTA           CT         T       A       -ATCGCAAGAT        TAT    G  TT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]