Single miRNA

Lsa-MIR403

Basic info.

miRNA locus ID
Lsa-MIR403

miRNA locus accession
PmiREN000000095

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_9 3378712 3378857 -

Comments
A member of family MIR403

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTGA        T    T  T             G       -    A  --A   ---    G   CG   CTG
      GAAGAGGC TATT TG GTTTGTGCGTGAA CTAACGA TGTA CC   GGT   GGTT AAT  ATG   
      |||||||| |||| || ||||||||||||| ||||||| |||| ||   |||   |||| |||  |||    
      CTTTTCTG ATAA GC CAAACACGCACTT GATTGCT GTAT GG   CCG   TCAA TTA  TAT   
CGTTCA        C    T  T             A       T    A  AGG   TAG    A   AG   CTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_29280.1	NA	NA	2
Lsat_1_v5_gn_1_30941.1	3	NA	NA
Lsat_1_v5_gn_2_20401.1	3	4	NA
Lsat_1_v5_gn_2_55360.1	NA	4	NA
Lsat_1_v5_gn_2_55601.1	NA	4	NA
Lsat_1_v5_gn_3_122421.1	NA	4	NA
Lsat_1_v5_gn_3_33900.1	NA	NA	0
Lsat_1_v5_gn_4_106121.1	NA	NA	2
Lsat_1_v5_gn_4_1780.1	NA	NA	2
Lsat_1_v5_gn_4_22000.1	0	NA	0
Lsat_1_v5_gn_4_22040.1	0	NA	0
Lsat_1_v5_gn_4_82140.1	NA	4	NA
Lsat_1_v5_gn_5_185801.1	NA	NA	2
Lsat_1_v5_gn_5_71221.1	2.5	NA	NA
Lsat_1_v5_gn_6_17160.1	NA	NA	2
Lsat_1_v5_gn_6_75921.1	NA	NA	2
Lsat_1_v5_gn_7_113161.1	NA	NA	2
Lsat_1_v5_gn_9_80141.1	NA	NA	2
Lsat_1_v5_gn_9_85240.1	NA	NA	2