Lsa-MIR477b

Basic info.

• miRNA locus ID
• Lsa-MIR477b

• miRNA locus accession
• PmiREN000000096

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_3  253379426  253379566  -

• Comments
• A member of family MIR478

• Confidence level
• 

Secondary strurture and sequence

  ACTT     A   G     AA      C  -          C   -    TTCCT    -       TTGTG
      GAGGC AAA TTGTT  CTCTCC TC AAGGGCTTCT ATT TGCC     ATTT CACACAT     
      ||||| ||| |||||  |||||| || |||||||||| ||| ||||     |||| |||||||      
      TTCTG TTT AACAG  GGGAGG AG TTCTCGAAGA TAA ACGG     TAAA GTGTGTG     
TAGATA     G   A     CA      A  C          -   C    --TAT    T       TTGCG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]