Single miRNA

Lsa-MIR408

Basic info.

miRNA locus ID
Lsa-MIR408

miRNA locus accession
PmiREN000000097

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_1 141416547 141416672 +

Comments
A member of family MIR408

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

       TG    TGT        A      C   A   A  C            ATG      TAA
    AGA  GAGA   GAGGGTAG CAGGGA GAG CGG GC CGAAAAAGACTG   GATACT   
    |||  ||||   |||||||| |||||| ||| ||| || ||||||||||||   ||||||    
    TCT  CTCT   TTCCTATC GTCCCT CTC GTC CG GCTTTTTTTGAT   TTATGA   
CACA   --    TGT        G      T   C   A  T            --A      CAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_124381.1	NA	4	NA
Lsat_1_v5_gn_1_18820.1	2.5	2	NA
Lsat_1_v5_gn_1_32161.1	NA	4	NA
Lsat_1_v5_gn_1_41540.1	NA	NA	2
Lsat_1_v5_gn_1_43420.1	NA	4	2
Lsat_1_v5_gn_1_65280.1	NA	NA	2
Lsat_1_v5_gn_1_66401.1	NA	NA	2
Lsat_1_v5_gn_1_77001.1	NA	4	NA
Lsat_1_v5_gn_1_9501.1	1.5	NA	0
Lsat_1_v5_gn_1_97880.1	NA	NA	2
Lsat_1_v5_gn_2_106221.1	NA	NA	2
Lsat_1_v5_gn_2_119420.1	NA	NA	2
Lsat_1_v5_gn_2_133880.1	NA	4	2
Lsat_1_v5_gn_2_21421.1	NA	4	1
Lsat_1_v5_gn_2_57540.1	NA	4	NA
Lsat_1_v5_gn_2_69001.1	NA	NA	2
Lsat_1_v5_gn_3_104360.1	NA	4	2
Lsat_1_v5_gn_3_117840.1	NA	4	NA
Lsat_1_v5_gn_3_121781.1	NA	NA	2
Lsat_1_v5_gn_3_125741.1	NA	4	2
Lsat_1_v5_gn_3_137960.1	NA	NA	2
Lsat_1_v5_gn_3_25341.1	NA	NA	2
Lsat_1_v5_gn_3_32780.1	NA	NA	2
Lsat_1_v5_gn_3_79841.1	NA	NA	2
Lsat_1_v5_gn_3_92421.1	NA	NA	1
Lsat_1_v5_gn_3_92441.1	NA	NA	2
Lsat_1_v5_gn_4_158180.1	NA	NA	2
Lsat_1_v5_gn_4_27921.1	NA	NA	2
Lsat_1_v5_gn_4_31560.1	1.5	2	0
Lsat_1_v5_gn_4_36461.1	NA	4	NA
Lsat_1_v5_gn_4_55461.1	NA	4	NA
Lsat_1_v5_gn_4_84380.1	NA	4	NA
Lsat_1_v5_gn_5_106240.1	NA	NA	2
Lsat_1_v5_gn_5_108740.1	NA	NA	2
Lsat_1_v5_gn_5_122040.1	NA	4	2
Lsat_1_v5_gn_5_158001.1	NA	NA	2
Lsat_1_v5_gn_5_168801.1	NA	NA	2
Lsat_1_v5_gn_5_19401.1	2.5	4	0
Lsat_1_v5_gn_5_33980.1	NA	4	NA
Lsat_1_v5_gn_5_41380.1	NA	4	NA
Lsat_1_v5_gn_5_43741.1	NA	4	NA
Lsat_1_v5_gn_5_44541.1	NA	NA	2
Lsat_1_v5_gn_5_52020.1	NA	4	NA
Lsat_1_v5_gn_5_8240.1	NA	NA	2
Lsat_1_v5_gn_5_91841.1	NA	NA	2
Lsat_1_v5_gn_6_100761.1	NA	NA	2
Lsat_1_v5_gn_6_26380.1	NA	4	NA
Lsat_1_v5_gn_6_2901.1	NA	4	NA
Lsat_1_v5_gn_6_71461.1	NA	4	NA
Lsat_1_v5_gn_6_81860.1	NA	NA	2
Lsat_1_v5_gn_7_12240.1	2	NA	NA
Lsat_1_v5_gn_7_58281.1	NA	NA	0
Lsat_1_v5_gn_7_67461.1	NA	NA	2
Lsat_1_v5_gn_7_77861.1	2	2	0
Lsat_1_v5_gn_7_8361.1	NA	4	NA
Lsat_1_v5_gn_7_84461.1	NA	4	NA
Lsat_1_v5_gn_7_91241.1	NA	NA	2
Lsat_1_v5_gn_7_91921.1	NA	4	NA
Lsat_1_v5_gn_8_100560.1	NA	2	2
Lsat_1_v5_gn_8_138961.1	NA	4	NA
Lsat_1_v5_gn_8_148061.1	NA	4	2
Lsat_1_v5_gn_8_39420.1	NA	4	NA
Lsat_1_v5_gn_8_57160.1	NA	NA	2
Lsat_1_v5_gn_8_7660.1	NA	NA	2
Lsat_1_v5_gn_8_82040.1	NA	NA	2
Lsat_1_v5_gn_8_85760.1	NA	4	NA
Lsat_1_v5_gn_9_121120.1	NA	NA	0
Lsat_1_v5_gn_9_1260.1	NA	4	NA
Lsat_1_v5_gn_9_62601.1	NA	NA	2
Lsat_1_v5_gn_9_6461.1	NA	NA	2
Lsat_1_v5_gn_9_70320.1	NA	NA	2
Lsat_1_v5_gn_9_73760.1	3	3	0
Lsat_1_v5_gn_9_93840.1	NA	4	NA