Single miRNA

Lsa-MIR536

Basic info.

miRNA locus ID
Lsa-MIR536

miRNA locus accession
PmiREN000000102

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_8 191040534 191040646 -

Comments
A member of family MIR536

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

       - A   -                A      A      GA     ----   ACA
TTAAGAG G TGT TTTTTAGACGCACACA GTGTGG ACCATA  ATCAT    ACT   
||||||| | ||| |||||||||||||||| |||||| ||||||  |||||    |||    
AATTCTC C ACA AGAAATCTGCGTGTGT CGCACC TGGTAT  TGGTA    TGA   
       G C   T                -      G      --     CTTC   CGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_4520.1	2.5	3	NA
Lsat_1_v5_gn_0_4560.1	2.5	3	NA
Lsat_1_v5_gn_1_23100.1	NA	NA	2
Lsat_1_v5_gn_1_76220.1	2.5	3	NA
Lsat_1_v5_gn_1_76260.1	2.5	3	NA
Lsat_1_v5_gn_1_76300.1	2.5	3	NA
Lsat_1_v5_gn_2_41901.1	1	1	0
Lsat_1_v5_gn_2_77780.1	NA	3	NA
Lsat_1_v5_gn_4_159141.1	NA	NA	2
Lsat_1_v5_gn_4_35321.1	NA	NA	2
Lsat_1_v5_gn_5_135721.1	NA	NA	2
Lsat_1_v5_gn_5_169160.1	NA	4	NA
Lsat_1_v5_gn_5_17481.1	NA	4	2
Lsat_1_v5_gn_5_84581.1	NA	NA	2
Lsat_1_v5_gn_6_100660.1	NA	NA	2
Lsat_1_v5_gn_6_22441.1	NA	4	2
Lsat_1_v5_gn_6_78660.1	NA	4	2
Lsat_1_v5_gn_7_7060.1	NA	4	NA
Lsat_1_v5_gn_7_97180.1	NA	4	NA
Lsat_1_v5_gn_8_73881.1	NA	NA	2
Lsat_1_v5_gn_9_41900.1	NA	NA	2