Single miRNA

Lsa-MIR6111

Basic info.

miRNA locus ID
Lsa-MIR6111

miRNA locus accession
PmiREN000000103

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_6 20408245 20408544 -

Comments
A member of family MIR6111

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

        A            C          G              TTCAA    T              A    GTA         A         T  CA     T   A      -   -----   A   G   T     T -  AAA
ATCCAACA GATGTTGGAGCT TTTATGTCAC ATGTATGACTTTTT     CGAT ACAAAGGATTATGA GGTA   TAGCCCACA GCAACACCA TG  TATCT GAG CATCGG CTC     TAC TGA ACT GTGCA C CA   
|||||||| |||||||||||| |||||||||| ||||||||||||||     |||| |||||||||||||| ||||   ||||||||| ||||||||| ||  ||||| ||| |||||| |||     ||| ||| ||| ||||| | ||    
TAGGTTGT CTACAATCTCGA AAATATAGTG TACGTACTGAAAAA     GCTA TGTTTCCTAATACT CCGT   ATTGGGTGT TGTTGTGGT AC  ATAGA CTT GTAGTC GAG     GTG ACT TGA CGTGT G GT   
        A            T          G              -CAAC    T              G    ACG         G         T  AG     C   C      T   TGAGA   C   G   T     T T  ATA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_129320.1	NA	NA	2
Lsat_1_v5_gn_1_25441.1	2.5	NA	0
Lsat_1_v5_gn_1_34320.1	3	NA	NA
Lsat_1_v5_gn_1_42601.1	2.5	NA	2
Lsat_1_v5_gn_1_42701.1	2.5	NA	NA
Lsat_1_v5_gn_1_42841.1	2.5	NA	NA
Lsat_1_v5_gn_1_54021.1	NA	4	NA
Lsat_1_v5_gn_1_72981.1	2	NA	2
Lsat_1_v5_gn_1_84440.1	2.5	4	0
Lsat_1_v5_gn_1_86001.1	2	NA	NA
Lsat_1_v5_gn_1_86361.1	2	NA	NA
Lsat_1_v5_gn_1_86441.1	2.5	NA	NA
Lsat_1_v5_gn_1_88221.1	2.5	NA	0
Lsat_1_v5_gn_1_89461.1	2.5	NA	2
Lsat_1_v5_gn_2_115321.1	NA	4	NA
Lsat_1_v5_gn_2_119480.1	1.5	3	2
Lsat_1_v5_gn_2_125581.1	NA	NA	2
Lsat_1_v5_gn_2_131260.1	3	NA	NA
Lsat_1_v5_gn_2_50401.1	NA	NA	2
Lsat_1_v5_gn_2_8261.1	2.5	4	NA
Lsat_1_v5_gn_2_82920.1	NA	4	NA
Lsat_1_v5_gn_3_128441.1	3	NA	NA
Lsat_1_v5_gn_3_35181.1	NA	NA	0
Lsat_1_v5_gn_3_39820.1	2.5	NA	NA
Lsat_1_v5_gn_3_61760.1	3	NA	NA
Lsat_1_v5_gn_4_152881.1	NA	NA	2
Lsat_1_v5_gn_4_155840.1	NA	NA	0
Lsat_1_v5_gn_4_160921.1	3	NA	2
Lsat_1_v5_gn_4_167181.1	3	3	NA
Lsat_1_v5_gn_4_167221.1	2.5	NA	NA
Lsat_1_v5_gn_4_167261.1	2.5	2	1
Lsat_1_v5_gn_4_167321.1	3	3	NA
Lsat_1_v5_gn_4_53440.1	NA	NA	0
Lsat_1_v5_gn_4_89360.1	2	NA	0
Lsat_1_v5_gn_5_103320.1	2	NA	2
Lsat_1_v5_gn_5_104861.1	NA	NA	0
Lsat_1_v5_gn_5_104901.1	2.5	NA	0
Lsat_1_v5_gn_5_113180.1	NA	NA	2
Lsat_1_v5_gn_5_133681.1	NA	NA	2
Lsat_1_v5_gn_5_32021.1	2	NA	NA
Lsat_1_v5_gn_5_32061.1	2	NA	NA
Lsat_1_v5_gn_5_45920.1	1.5	NA	0
Lsat_1_v5_gn_5_50580.1	3	NA	NA
Lsat_1_v5_gn_5_55560.1	3	NA	NA
Lsat_1_v5_gn_5_55700.1	3	NA	NA
Lsat_1_v5_gn_5_76060.1	3	4	NA
Lsat_1_v5_gn_5_76080.1	3	4	NA
Lsat_1_v5_gn_5_90640.1	NA	NA	2
Lsat_1_v5_gn_6_108521.1	3	NA	NA
Lsat_1_v5_gn_6_17600.1	1.5	NA	NA
Lsat_1_v5_gn_6_63641.1	NA	NA	2
Lsat_1_v5_gn_7_102060.1	3	NA	NA
Lsat_1_v5_gn_7_104181.1	NA	NA	2
Lsat_1_v5_gn_7_110021.1	NA	NA	2
Lsat_1_v5_gn_7_31301.1	NA	4	NA
Lsat_1_v5_gn_7_31340.1	2	NA	NA
Lsat_1_v5_gn_7_31420.1	2	NA	NA
Lsat_1_v5_gn_7_44440.1	2.5	3	NA
Lsat_1_v5_gn_7_44480.1	2.5	3	NA
Lsat_1_v5_gn_7_44540.1	1.5	3	NA
Lsat_1_v5_gn_7_44661.1	2.5	NA	2
Lsat_1_v5_gn_7_44721.1	2.5	3	NA
Lsat_1_v5_gn_7_44760.1	2.5	3	0
Lsat_1_v5_gn_7_49881.1	3	NA	NA
Lsat_1_v5_gn_7_54721.1	2.5	NA	0
Lsat_1_v5_gn_7_54781.1	2.5	NA	0
Lsat_1_v5_gn_7_62560.1	1.5	NA	NA
Lsat_1_v5_gn_7_62580.1	1.5	NA	NA
Lsat_1_v5_gn_7_62620.1	3	NA	NA
Lsat_1_v5_gn_7_62740.1	NA	4	NA
Lsat_1_v5_gn_7_62820.1	2.5	4	2
Lsat_1_v5_gn_7_62840.1	NA	NA	0
Lsat_1_v5_gn_7_62860.1	2.5	4	0
Lsat_1_v5_gn_7_62960.1	3	NA	NA
Lsat_1_v5_gn_7_63020.1	NA	NA	0
Lsat_1_v5_gn_7_63440.1	NA	NA	2
Lsat_1_v5_gn_7_64441.1	2.5	NA	0
Lsat_1_v5_gn_7_64461.1	2.5	NA	2
Lsat_1_v5_gn_7_66640.1	NA	NA	2
Lsat_1_v5_gn_7_79861.1	3	NA	NA
Lsat_1_v5_gn_7_84100.1	NA	NA	2
Lsat_1_v5_gn_8_101860.1	2.5	3	2
Lsat_1_v5_gn_8_102380.1	2.5	NA	NA
Lsat_1_v5_gn_8_102601.1	NA	NA	1
Lsat_1_v5_gn_8_102901.1	3	NA	2
Lsat_1_v5_gn_8_102941.1	3	NA	NA
Lsat_1_v5_gn_8_25860.1	NA	NA	2
Lsat_1_v5_gn_8_25880.1	3	NA	0
Lsat_1_v5_gn_8_26681.1	3	4	2
Lsat_1_v5_gn_8_27040.1	3	NA	0
Lsat_1_v5_gn_8_27081.1	2.5	NA	NA
Lsat_1_v5_gn_8_27320.1	2.5	NA	NA
Lsat_1_v5_gn_8_4600.1	NA	NA	0
Lsat_1_v5_gn_8_47041.1	2	NA	NA
Lsat_1_v5_gn_8_47061.1	2.5	NA	NA
Lsat_1_v5_gn_8_75181.1	3	NA	NA
Lsat_1_v5_gn_9_10560.1	3	NA	2
Lsat_1_v5_gn_9_119560.1	3	NA	NA
Lsat_1_v5_gn_9_122720.1	3	NA	NA
Lsat_1_v5_gn_9_125280.1	2.5	NA	2
Lsat_1_v5_gn_9_89300.1	2.5	4	0
Lsat_1_v5_gn_9_90260.1	2.5	4	0