Single miRNA

Lsa-MIRN7101

Basic info.

miRNA locus ID
Lsa-MIRN7101

miRNA locus accession
PmiREN000000106

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_2 157212358 157212469 -

Comments
A member of family MIRN7101

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AAAAGAGTCTGTTTTAG  GCCAAGGATGACTTGCCGCTGGCTTTATATACAGCATATTAGCAT
                 TA                                             
                 ||                                             A
                 TC                                             
                   TATTCTGAGGCGGTATAATCTGTTCCTGCGAACGACGAACGAACT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_55881.1	3	NA	NA
Lsat_1_v5_gn_2_130560.1	NA	NA	2
Lsat_1_v5_gn_2_40161.1	NA	4	NA
Lsat_1_v5_gn_3_127861.1	NA	4	NA
Lsat_1_v5_gn_4_3221.1	NA	NA	2
Lsat_1_v5_gn_5_136241.1	NA	NA	2
Lsat_1_v5_gn_5_145641.1	NA	4	NA
Lsat_1_v5_gn_5_168340.1	NA	NA	2
Lsat_1_v5_gn_6_97421.1	NA	NA	2
Lsat_1_v5_gn_7_79780.1	3	NA	NA
Lsat_1_v5_gn_8_123961.1	3	NA	2
Lsat_1_v5_gn_8_147160.1	NA	NA	2
Lsat_1_v5_gn_8_84120.1	NA	4	NA
Lsat_1_v5_gn_9_15261.1	NA	4	2