Single miRNA

Lsa-MIRN7104

Basic info.

miRNA locus ID
Lsa-MIRN7104

miRNA locus accession
PmiREN000000108

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_1 173688265 173688370 +

Comments
A member of family MIRN7104

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

               ATTTTGAATGTATTTCCAAAATCTGAGATCTTGGCGTTCC
              A                                        
              |                                        A
              T                                        
AAGTTTTCATCACG GGCACTATAGTTCTCGAGGTTATAGAATAATCTCTTTTTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_40400.1	NA	4	NA
Lsat_1_v5_gn_1_109460.1	NA	4	2
Lsat_1_v5_gn_1_116480.1	NA	NA	2
Lsat_1_v5_gn_1_18461.1	NA	NA	2
Lsat_1_v5_gn_1_45420.1	2.5	4	NA
Lsat_1_v5_gn_1_45540.1	2.5	4	NA
Lsat_1_v5_gn_1_45560.1	2.5	4	NA
Lsat_1_v5_gn_1_51960.1	2.5	NA	2
Lsat_1_v5_gn_1_52881.1	3	NA	NA
Lsat_1_v5_gn_1_53780.1	3	NA	NA
Lsat_1_v5_gn_1_6001.1	NA	NA	2
Lsat_1_v5_gn_1_69940.1	NA	NA	2
Lsat_1_v5_gn_1_73301.1	NA	NA	2
Lsat_1_v5_gn_2_106620.1	3	NA	NA
Lsat_1_v5_gn_2_113521.1	3	NA	NA
Lsat_1_v5_gn_2_114861.1	NA	NA	2
Lsat_1_v5_gn_2_114921.1	3	NA	NA
Lsat_1_v5_gn_2_115701.1	NA	NA	2
Lsat_1_v5_gn_2_130500.1	2.5	2	NA
Lsat_1_v5_gn_2_130641.1	NA	NA	1
Lsat_1_v5_gn_2_13421.1	3	NA	NA
Lsat_1_v5_gn_2_51941.1	3	4	NA
Lsat_1_v5_gn_2_57821.1	NA	4	NA
Lsat_1_v5_gn_2_62280.1	3	NA	NA
Lsat_1_v5_gn_2_73681.1	2.5	NA	NA
Lsat_1_v5_gn_2_75361.1	2.5	NA	NA
Lsat_1_v5_gn_3_62921.1	NA	NA	2
Lsat_1_v5_gn_3_6681.1	NA	NA	2
Lsat_1_v5_gn_3_6860.1	NA	NA	2
Lsat_1_v5_gn_3_69141.1	3	NA	NA
Lsat_1_v5_gn_3_7380.1	NA	4	NA
Lsat_1_v5_gn_4_400.1	NA	NA	2
Lsat_1_v5_gn_4_43041.1	NA	NA	2
Lsat_1_v5_gn_4_88520.1	NA	NA	2
Lsat_1_v5_gn_4_98620.1	1.5	NA	NA
Lsat_1_v5_gn_5_104861.1	3	NA	NA
Lsat_1_v5_gn_5_118500.1	NA	4	NA
Lsat_1_v5_gn_5_125361.1	3	NA	NA
Lsat_1_v5_gn_5_168181.1	NA	NA	1
Lsat_1_v5_gn_5_180201.1	2.5	NA	NA
Lsat_1_v5_gn_5_2441.1	NA	NA	2
Lsat_1_v5_gn_5_37901.1	3	NA	NA
Lsat_1_v5_gn_5_42521.1	2.5	NA	NA
Lsat_1_v5_gn_5_42581.1	2	3	NA
Lsat_1_v5_gn_5_44521.1	NA	NA	2
Lsat_1_v5_gn_5_45920.1	2	NA	NA
Lsat_1_v5_gn_5_49081.1	NA	NA	2
Lsat_1_v5_gn_5_50580.1	2.5	4	NA
Lsat_1_v5_gn_5_53121.1	NA	4	NA
Lsat_1_v5_gn_5_54160.1	2.5	4	NA
Lsat_1_v5_gn_5_54180.1	NA	4	NA
Lsat_1_v5_gn_5_54521.1	2.5	4	NA
Lsat_1_v5_gn_5_55560.1	1.5	1	2
Lsat_1_v5_gn_5_55640.1	2.5	NA	NA
Lsat_1_v5_gn_5_55700.1	2	NA	NA
Lsat_1_v5_gn_5_63520.1	3	NA	NA
Lsat_1_v5_gn_5_63761.1	2.5	NA	NA
Lsat_1_v5_gn_5_63781.1	3	NA	NA
Lsat_1_v5_gn_5_76060.1	3	NA	NA
Lsat_1_v5_gn_5_76080.1	1.5	3	NA
Lsat_1_v5_gn_6_114601.1	3	NA	NA
Lsat_1_v5_gn_6_18720.1	3	NA	NA
Lsat_1_v5_gn_6_22561.1	NA	4	NA
Lsat_1_v5_gn_6_2461.1	2	NA	NA
Lsat_1_v5_gn_6_59340.1	NA	NA	2
Lsat_1_v5_gn_6_62421.1	2.5	NA	NA
Lsat_1_v5_gn_6_73621.1	3	NA	NA
Lsat_1_v5_gn_6_73661.1	3	NA	NA
Lsat_1_v5_gn_6_73741.1	3	NA	NA
Lsat_1_v5_gn_6_78280.1	3	4	NA
Lsat_1_v5_gn_6_94601.1	NA	NA	1
Lsat_1_v5_gn_7_107541.1	3	NA	NA
Lsat_1_v5_gn_7_18141.1	3	NA	NA
Lsat_1_v5_gn_7_20220.1	3	NA	NA
Lsat_1_v5_gn_7_4100.1	NA	4	NA
Lsat_1_v5_gn_7_49881.1	2	NA	NA
Lsat_1_v5_gn_7_65980.1	NA	4	2
Lsat_1_v5_gn_7_70840.1	3	NA	NA
Lsat_1_v5_gn_8_20520.1	3	NA	NA
Lsat_1_v5_gn_8_34901.1	2.5	NA	NA
Lsat_1_v5_gn_8_37921.1	3	NA	NA
Lsat_1_v5_gn_8_48940.1	3	NA	NA
Lsat_1_v5_gn_8_79401.1	NA	4	NA
Lsat_1_v5_gn_9_122541.1	NA	NA	2
Lsat_1_v5_gn_9_122720.1	2.5	NA	NA
Lsat_1_v5_gn_9_66221.1	NA	NA	0