Single miRNA

Lsa-MIRN1643

Basic info.

miRNA locus ID
Lsa-MIRN1643

miRNA locus accession
PmiREN000000115

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 298746627 298746780 -

Comments
A member of family MIRN1643

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TCCATGTGCTACCAACAATT    ATC       G  -     ---       CTTCCCATCTTAA       --AC  TCACCA
                      GTTC   TCTTGTT TA ATGAT   AATTGTA             ACCAGTT    GC      
                      ||||   ||||||| || |||||   |||||||             |||||||    ||       
                      CAAG   AGAACAA AT TACTG   TTAGCAT             TGGTCGA    CG      
CTCCTACTACGCACCATCTTTC    --A       G  C     CAC       ----------ACC       ACTC  CCATCA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_19660.1	1.5	NA	NA
Lsat_1_v5_gn_0_19800.1	1.5	NA	NA
Lsat_1_v5_gn_0_19860.1	1.5	NA	NA
Lsat_1_v5_gn_0_19880.1	1.5	NA	NA
Lsat_1_v5_gn_0_19981.1	3	NA	NA
Lsat_1_v5_gn_0_30981.1	1.5	NA	NA
Lsat_1_v5_gn_0_43420.1	1.5	NA	NA
Lsat_1_v5_gn_0_43840.1	1	NA	NA
Lsat_1_v5_gn_1_101001.1	3	NA	NA
Lsat_1_v5_gn_1_101021.1	3	NA	NA
Lsat_1_v5_gn_1_101141.1	3	NA	NA
Lsat_1_v5_gn_1_105241.1	3	NA	NA
Lsat_1_v5_gn_1_124100.1	3	NA	NA
Lsat_1_v5_gn_1_37260.1	3	NA	NA
Lsat_1_v5_gn_1_43380.1	NA	NA	2
Lsat_1_v5_gn_1_85921.1	1	NA	NA
Lsat_1_v5_gn_1_91880.1	3	NA	NA
Lsat_1_v5_gn_1_92080.1	3	NA	NA
Lsat_1_v5_gn_1_94101.1	3	NA	NA
Lsat_1_v5_gn_1_94121.1	3	NA	NA
Lsat_1_v5_gn_1_94481.1	3	NA	NA
Lsat_1_v5_gn_1_97241.1	3	NA	NA
Lsat_1_v5_gn_1_98321.1	NA	3	NA
Lsat_1_v5_gn_1_99180.1	3	NA	NA
Lsat_1_v5_gn_1_99400.1	3	NA	NA
Lsat_1_v5_gn_2_108321.1	2	NA	NA
Lsat_1_v5_gn_2_11060.1	NA	4	NA
Lsat_1_v5_gn_2_11741.1	3	NA	NA
Lsat_1_v5_gn_2_12381.1	3	NA	NA
Lsat_1_v5_gn_2_13121.1	3	NA	NA
Lsat_1_v5_gn_2_13161.1	3	NA	NA
Lsat_1_v5_gn_2_134181.1	NA	4	NA
Lsat_1_v5_gn_2_136020.1	1.5	4	NA
Lsat_1_v5_gn_2_14340.1	3	NA	NA
Lsat_1_v5_gn_2_14581.1	2.5	NA	NA
Lsat_1_v5_gn_2_15901.1	1	NA	NA
Lsat_1_v5_gn_2_15981.1	2	NA	NA
Lsat_1_v5_gn_2_17301.1	1.5	4	NA
Lsat_1_v5_gn_2_25361.1	1.5	2	NA
Lsat_1_v5_gn_2_33141.1	2.5	NA	NA
Lsat_1_v5_gn_2_44040.1	2	NA	NA
Lsat_1_v5_gn_3_108961.1	2.5	NA	NA
Lsat_1_v5_gn_3_115800.1	1.5	NA	NA
Lsat_1_v5_gn_3_116300.1	2	NA	NA
Lsat_1_v5_gn_3_116440.1	3	NA	NA
Lsat_1_v5_gn_3_116500.1	2.5	NA	NA
Lsat_1_v5_gn_3_116920.1	3	NA	NA
Lsat_1_v5_gn_3_117761.1	1.5	NA	NA
Lsat_1_v5_gn_3_117880.1	1.5	NA	NA
Lsat_1_v5_gn_3_118260.1	3	NA	NA
Lsat_1_v5_gn_3_20980.1	2.5	NA	NA
Lsat_1_v5_gn_3_45480.1	NA	NA	2
Lsat_1_v5_gn_3_7441.1	3	NA	NA
Lsat_1_v5_gn_4_111140.1	1	NA	NA
Lsat_1_v5_gn_4_135540.1	2.5	NA	NA
Lsat_1_v5_gn_4_144921.1	2	NA	NA
Lsat_1_v5_gn_4_147380.1	1	NA	NA
Lsat_1_v5_gn_4_147480.1	1	NA	NA
Lsat_1_v5_gn_4_148140.1	1	NA	NA
Lsat_1_v5_gn_4_148200.1	1	NA	NA
Lsat_1_v5_gn_4_148261.1	1	NA	1
Lsat_1_v5_gn_4_148360.1	1	NA	NA
Lsat_1_v5_gn_4_148421.1	1	NA	NA
Lsat_1_v5_gn_4_150441.1	1	NA	NA
Lsat_1_v5_gn_4_150461.1	2.5	NA	NA
Lsat_1_v5_gn_4_150561.1	1	NA	NA
Lsat_1_v5_gn_4_150621.1	1	NA	NA
Lsat_1_v5_gn_4_150641.1	1	NA	NA
Lsat_1_v5_gn_4_150681.1	1	NA	NA
Lsat_1_v5_gn_4_37660.1	2.5	NA	NA
Lsat_1_v5_gn_4_37841.1	1.5	NA	NA
Lsat_1_v5_gn_4_37901.1	1.5	NA	NA
Lsat_1_v5_gn_4_37921.1	0	NA	NA
Lsat_1_v5_gn_4_74580.1	NA	NA	2
Lsat_1_v5_gn_4_93600.1	NA	4	NA
Lsat_1_v5_gn_5_128960.1	1.5	NA	NA
Lsat_1_v5_gn_5_149040.1	NA	NA	2
Lsat_1_v5_gn_5_164620.1	2.5	NA	NA
Lsat_1_v5_gn_5_241.1	NA	NA	2
Lsat_1_v5_gn_5_27220.1	1.5	4	NA
Lsat_1_v5_gn_5_38001.1	0	NA	NA
Lsat_1_v5_gn_5_38020.1	0	NA	NA
Lsat_1_v5_gn_5_39440.1	0	NA	NA
Lsat_1_v5_gn_5_39460.1	0	NA	NA
Lsat_1_v5_gn_5_39581.1	0	NA	NA
Lsat_1_v5_gn_6_17720.1	NA	NA	2
Lsat_1_v5_gn_6_74641.1	0	NA	NA
Lsat_1_v5_gn_7_105380.1	3	NA	NA
Lsat_1_v5_gn_7_115481.1	3	NA	NA
Lsat_1_v5_gn_7_44940.1	2.5	NA	NA
Lsat_1_v5_gn_7_63920.1	3	NA	NA
Lsat_1_v5_gn_7_7241.1	NA	NA	2
Lsat_1_v5_gn_8_11900.1	NA	NA	2
Lsat_1_v5_gn_8_40680.1	2.5	NA	NA
Lsat_1_v5_gn_8_63660.1	3	NA	NA
Lsat_1_v5_gn_8_76040.1	2.5	NA	NA
Lsat_1_v5_gn_8_82140.1	1.5	NA	1
Lsat_1_v5_gn_9_14041.1	2.5	NA	NA
Lsat_1_v5_gn_9_14781.1	0	NA	NA
Lsat_1_v5_gn_9_40181.1	NA	NA	1
Lsat_1_v5_gn_9_90140.1	1	NA	NA
Lsat_1_v5_gn_9_90700.1	1	NA	NA
Lsat_1_v5_gn_9_91281.1	1	NA	NA
Lsat_1_v5_gn_9_91361.1	2.5	NA	NA
Lsat_1_v5_gn_9_91400.1	1.5	NA	NA
Lsat_1_v5_gn_9_91441.1	1	NA	NA
Lsat_1_v5_gn_9_91461.1	2.5	NA	NA
Lsat_1_v5_gn_9_91481.1	1	NA	NA
Lsat_1_v5_gn_9_91521.1	2	NA	NA
Lsat_1_v5_gn_9_91720.1	1	2	NA
Lsat_1_v5_gn_9_91840.1	1	NA	NA
Lsat_1_v5_gn_9_91880.1	1	NA	NA
Lsat_1_v5_gn_9_91940.1	1	NA	NA
Lsat_1_v5_gn_9_92681.1	1	NA	NA
Lsat_1_v5_gn_9_92720.1	2.5	NA	NA
Lsat_1_v5_gn_9_92740.1	0	NA	NA
Lsat_1_v5_gn_9_92800.1	0	NA	NA
Lsat_1_v5_gn_9_92860.1	1	2	NA
Lsat_1_v5_gn_9_92980.1	0	NA	NA
Lsat_1_v5_gn_9_93340.1	0	NA	NA