Single miRNA

Lsa-MIRN7103

Basic info.

miRNA locus ID
Lsa-MIRN7103

miRNA locus accession
PmiREN000000126

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_1 66678733 66678853 +

Comments
A member of family MIRN7103

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

                                                       A    A
  AAGATCATTCATACCATCCACTTCTAAATAAAGCACCTGGGTTGTGGCAATGA TTTG 
  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| A
  TTCTAGTAAGTATGGTAGGTGAAGATTTATTTCGTGGACCCAACACTGTTACT AAAC 
AG                                                     C    T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_22900.1	2	NA	NA
Lsat_1_v5_gn_1_61261.1	NA	4	NA
Lsat_1_v5_gn_1_86520.1	NA	4	NA
Lsat_1_v5_gn_2_107800.1	NA	4	NA
Lsat_1_v5_gn_2_108301.1	NA	NA	0
Lsat_1_v5_gn_2_1100.1	2	NA	NA
Lsat_1_v5_gn_2_125401.1	NA	NA	2
Lsat_1_v5_gn_2_1721.1	2.5	NA	NA
Lsat_1_v5_gn_2_23801.1	2	NA	NA
Lsat_1_v5_gn_2_241.1	2	NA	NA
Lsat_1_v5_gn_2_261.1	2	NA	NA
Lsat_1_v5_gn_2_281.1	2	NA	NA
Lsat_1_v5_gn_2_880.1	2	NA	NA
Lsat_1_v5_gn_3_97800.1	2	NA	NA
Lsat_1_v5_gn_4_107960.1	3	NA	NA
Lsat_1_v5_gn_4_118240.1	3	NA	NA
Lsat_1_v5_gn_4_136101.1	3	NA	NA
Lsat_1_v5_gn_4_44480.1	NA	4	NA
Lsat_1_v5_gn_5_53081.1	NA	NA	2
Lsat_1_v5_gn_5_62020.1	1.5	NA	2
Lsat_1_v5_gn_5_76861.1	3	NA	NA
Lsat_1_v5_gn_7_3621.1	3	NA	NA
Lsat_1_v5_gn_7_89281.1	NA	4	NA
Lsat_1_v5_gn_8_24801.1	3	NA	2
Lsat_1_v5_gn_9_12260.1	NA	3	NA
Lsat_1_v5_gn_9_123920.1	2.5	NA	NA
Lsat_1_v5_gn_9_14481.1	3	NA	NA
Lsat_1_v5_gn_9_35760.1	NA	4	NA
Lsat_1_v5_gn_9_41220.1	NA	NA	2
Lsat_1_v5_gn_9_88720.1	3	NA	NA