Single miRNA

Lsa-MIRN7089

Basic info.

miRNA locus ID
Lsa-MIRN7089

miRNA locus accession
PmiREN000000146

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_1 57653485 57653607 -

Comments
A member of family MIRN7089

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  ATTCGCATT  T        A        C             C    TT     ACAAG
           GT TATAATCC GATAAATG GATCTTGTTGCAT TGCT  ATGCA     
           || |||||||| |||||||| ||||||||||||| ||||  |||||     A
           CA ATATTAGG CTATTTAC CTGGAACAACGTA ACGA  TATGT     
CGTAAGTCTAA  T        A        A             C    TC     ACAAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_56381.1	NA	NA	2
Lsat_1_v5_gn_3_126840.1	2.5	NA	NA
Lsat_1_v5_gn_3_1680.1	2.5	NA	NA
Lsat_1_v5_gn_3_6620.1	NA	NA	2
Lsat_1_v5_gn_4_101760.1	3	NA	NA
Lsat_1_v5_gn_4_89921.1	3	NA	NA
Lsat_1_v5_gn_5_104601.1	NA	NA	2
Lsat_1_v5_gn_5_104741.1	2.5	NA	NA
Lsat_1_v5_gn_5_135281.1	3	NA	NA
Lsat_1_v5_gn_5_190180.1	2.5	NA	NA
Lsat_1_v5_gn_5_3021.1	3	NA	2
Lsat_1_v5_gn_6_117881.1	3	NA	NA
Lsat_1_v5_gn_6_28920.1	1	NA	2
Lsat_1_v5_gn_6_71841.1	NA	4	NA
Lsat_1_v5_gn_7_12700.1	NA	NA	2
Lsat_1_v5_gn_7_44381.1	3	NA	NA
Lsat_1_v5_gn_7_81260.1	2.5	NA	NA
Lsat_1_v5_gn_9_6020.1	3	NA	NA