Single miRNA

Lsa-MIRN1664

Basic info.

miRNA locus ID
Lsa-MIRN1664

miRNA locus accession
PmiREN000000148

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_3 72587851 72587953 -

Comments
A member of family MIRN1664

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  -T               T    A        -T         AT    TTA
 A  GATCTGTAAGTAATG GTGG ATGGGTGG  TTGGAAAGA  GGAA   
 |  ||||||||||||||| |||| ||||||||  |||||||||  ||||    
 T  TTAGGTGTTCATTAT CGCC TACCCACC  AACCTTTCT  TCTT   
C TC               T    G        TT         CC    CGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_20061.1	2	NA	1
Lsat_1_v5_gn_0_23641.1	2.5	NA	NA
Lsat_1_v5_gn_0_37300.1	NA	4	NA
Lsat_1_v5_gn_0_4881.1	3	4	NA
Lsat_1_v5_gn_1_101141.1	1.5	NA	NA
Lsat_1_v5_gn_1_101181.1	3	NA	NA
Lsat_1_v5_gn_1_101761.1	2.5	NA	NA
Lsat_1_v5_gn_1_101861.1	3	NA	NA
Lsat_1_v5_gn_1_101920.1	3	NA	NA
Lsat_1_v5_gn_1_101960.1	2.5	NA	NA
Lsat_1_v5_gn_1_102000.1	1.5	NA	NA
Lsat_1_v5_gn_1_102041.1	3	NA	NA
Lsat_1_v5_gn_1_102120.1	2.5	NA	NA
Lsat_1_v5_gn_1_102140.1	3	NA	NA
Lsat_1_v5_gn_1_105241.1	3	NA	NA
Lsat_1_v5_gn_1_4160.1	2.5	NA	NA
Lsat_1_v5_gn_1_49781.1	3	NA	NA
Lsat_1_v5_gn_1_52061.1	NA	NA	0
Lsat_1_v5_gn_1_63140.1	NA	NA	2
Lsat_1_v5_gn_1_63160.1	NA	NA	2
Lsat_1_v5_gn_1_66260.1	1	NA	NA
Lsat_1_v5_gn_1_77280.1	3	3	NA
Lsat_1_v5_gn_1_77560.1	2.5	NA	NA
Lsat_1_v5_gn_1_78540.1	2.5	NA	NA
Lsat_1_v5_gn_1_79880.1	3	4	NA
Lsat_1_v5_gn_1_80040.1	3	NA	NA
Lsat_1_v5_gn_1_80200.1	2.5	NA	NA
Lsat_1_v5_gn_1_80340.1	2.5	NA	NA
Lsat_1_v5_gn_1_85420.1	3	3	NA
Lsat_1_v5_gn_1_85921.1	2.5	NA	NA
Lsat_1_v5_gn_1_86321.1	2.5	NA	NA
Lsat_1_v5_gn_1_8801.1	3	NA	NA
Lsat_1_v5_gn_1_90240.1	2.5	NA	NA
Lsat_1_v5_gn_1_90860.1	NA	NA	2
Lsat_1_v5_gn_1_92860.1	3	NA	NA
Lsat_1_v5_gn_1_93941.1	2.5	NA	NA
Lsat_1_v5_gn_1_94001.1	2.5	NA	NA
Lsat_1_v5_gn_1_94101.1	2.5	NA	NA
Lsat_1_v5_gn_1_94481.1	3	NA	NA
Lsat_1_v5_gn_1_95000.1	2.5	NA	NA
Lsat_1_v5_gn_1_95060.1	3	NA	NA
Lsat_1_v5_gn_1_97241.1	NA	4	NA
Lsat_1_v5_gn_1_98261.1	3	NA	NA
Lsat_1_v5_gn_1_98341.1	3	NA	NA
Lsat_1_v5_gn_1_99400.1	3	NA	NA
Lsat_1_v5_gn_2_10820.1	3	NA	NA
Lsat_1_v5_gn_2_1200.1	2.5	NA	NA
Lsat_1_v5_gn_2_1280.1	3	NA	NA
Lsat_1_v5_gn_2_13981.1	3	NA	NA
Lsat_1_v5_gn_2_14061.1	3	NA	NA
Lsat_1_v5_gn_2_19760.1	NA	NA	2
Lsat_1_v5_gn_2_21441.1	NA	4	NA
Lsat_1_v5_gn_2_26880.1	3	NA	NA
Lsat_1_v5_gn_2_27381.1	2	NA	NA
Lsat_1_v5_gn_2_30621.1	3	NA	NA
Lsat_1_v5_gn_2_4161.1	NA	NA	2
Lsat_1_v5_gn_2_5621.1	3	NA	1
Lsat_1_v5_gn_2_5761.1	3	NA	2
Lsat_1_v5_gn_2_60401.1	1.5	NA	NA
Lsat_1_v5_gn_2_7260.1	0	1	0
Lsat_1_v5_gn_2_83120.1	NA	4	NA
Lsat_1_v5_gn_2_84400.1	3	NA	NA
Lsat_1_v5_gn_2_880.1	NA	NA	1
Lsat_1_v5_gn_3_117600.1	2.5	NA	NA
Lsat_1_v5_gn_3_118161.1	3	NA	2
Lsat_1_v5_gn_3_118201.1	2.5	NA	NA
Lsat_1_v5_gn_3_120701.1	NA	NA	2
Lsat_1_v5_gn_3_120901.1	3	NA	NA
Lsat_1_v5_gn_3_129760.1	3	NA	NA
Lsat_1_v5_gn_3_132141.1	2.5	NA	NA
Lsat_1_v5_gn_3_132561.1	2.5	3	NA
Lsat_1_v5_gn_3_22540.1	NA	NA	2
Lsat_1_v5_gn_3_26920.1	NA	4	NA
Lsat_1_v5_gn_3_39241.1	NA	NA	2
Lsat_1_v5_gn_3_48720.1	3	NA	NA
Lsat_1_v5_gn_3_56940.1	0	0	NA
Lsat_1_v5_gn_3_80781.1	NA	NA	2
Lsat_1_v5_gn_3_84440.1	NA	NA	2
Lsat_1_v5_gn_3_90660.1	NA	NA	2
Lsat_1_v5_gn_4_111840.1	2.5	NA	NA
Lsat_1_v5_gn_4_153581.1	NA	NA	2
Lsat_1_v5_gn_4_155261.1	NA	NA	2
Lsat_1_v5_gn_4_164640.1	3	NA	NA
Lsat_1_v5_gn_4_23880.1	NA	4	NA
Lsat_1_v5_gn_4_23901.1	NA	4	NA
Lsat_1_v5_gn_4_51620.1	NA	3	NA
Lsat_1_v5_gn_4_58560.1	2	4	NA
Lsat_1_v5_gn_4_73921.1	NA	4	NA
Lsat_1_v5_gn_4_74620.1	NA	NA	2
Lsat_1_v5_gn_4_89100.1	NA	NA	2
Lsat_1_v5_gn_5_104621.1	NA	4	NA
Lsat_1_v5_gn_5_123180.1	NA	NA	2
Lsat_1_v5_gn_5_124321.1	NA	NA	2
Lsat_1_v5_gn_5_176860.1	2	NA	NA
Lsat_1_v5_gn_5_185441.1	3	NA	NA
Lsat_1_v5_gn_5_190620.1	NA	NA	2
Lsat_1_v5_gn_5_21481.1	NA	4	NA
Lsat_1_v5_gn_5_78281.1	3	NA	2
Lsat_1_v5_gn_5_87280.1	NA	NA	2
Lsat_1_v5_gn_6_108181.1	NA	4	NA
Lsat_1_v5_gn_6_25040.1	NA	4	NA
Lsat_1_v5_gn_6_31400.1	NA	3	NA
Lsat_1_v5_gn_6_62560.1	3	NA	NA
Lsat_1_v5_gn_7_15781.1	3	NA	NA
Lsat_1_v5_gn_7_35540.1	3	NA	NA
Lsat_1_v5_gn_7_46620.1	3	NA	2
Lsat_1_v5_gn_7_48240.1	3	NA	0
Lsat_1_v5_gn_7_66420.1	3	NA	2
Lsat_1_v5_gn_7_68501.1	NA	NA	2
Lsat_1_v5_gn_7_81800.1	NA	NA	2
Lsat_1_v5_gn_8_10841.1	2	NA	0
Lsat_1_v5_gn_8_112120.1	NA	4	NA
Lsat_1_v5_gn_8_119380.1	2	NA	0
Lsat_1_v5_gn_8_121240.1	2	NA	0
Lsat_1_v5_gn_8_124080.1	NA	NA	2
Lsat_1_v5_gn_8_124100.1	2.5	NA	2
Lsat_1_v5_gn_8_149501.1	NA	NA	2
Lsat_1_v5_gn_8_18660.1	3	NA	2
Lsat_1_v5_gn_8_36021.1	3	NA	NA
Lsat_1_v5_gn_9_123641.1	3	NA	2
Lsat_1_v5_gn_9_26680.1	NA	3	NA
Lsat_1_v5_gn_9_58401.1	NA	NA	2
Lsat_1_v5_gn_9_71760.1	NA	NA	2
Lsat_1_v5_gn_9_880.1	NA	NA	2
Lsat_1_v5_gn_9_89300.1	NA	4	NA