Single miRNA

Lsa-MIRN272

Basic info.

miRNA locus ID
Lsa-MIRN272

miRNA locus accession
PmiREN000000150

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_4 30421047 30421283 +

Comments
A member of family MIRN272

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

                     GGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGAAAAAAAATAAAGCATTGGGTCGAACTCTTTTTTGGTGTCAAGGTAATCGCGATGAATAGTCA
                    G                                                                                                           
                    |                                                                                                           T
                    A                                                                                                           
AACTAAATTCAAGAAAAGAA GATTCTCCACCTTATCTTATTGGGCCAACTTCGCATTACTAGTATGCAGATATTACGTAACACACAGGGTATTACCCAGAATAAGAAGATCGGAAAGGGGCTTCAGC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_30981.1	2.5	NA	NA
Lsat_1_v5_gn_1_120680.1	NA	3	NA
Lsat_1_v5_gn_1_33920.1	NA	NA	2
Lsat_1_v5_gn_1_68941.1	NA	3	NA
Lsat_1_v5_gn_1_71681.1	NA	NA	2
Lsat_1_v5_gn_1_86321.1	3	NA	NA
Lsat_1_v5_gn_2_53840.1	3	NA	NA
Lsat_1_v5_gn_3_115800.1	2	NA	NA
Lsat_1_v5_gn_3_116440.1	3	NA	NA
Lsat_1_v5_gn_3_116460.1	3	NA	NA
Lsat_1_v5_gn_3_116920.1	3	NA	NA
Lsat_1_v5_gn_3_117880.1	2	NA	NA
Lsat_1_v5_gn_3_118060.1	2	NA	NA
Lsat_1_v5_gn_3_118121.1	3	NA	NA
Lsat_1_v5_gn_3_118260.1	3	NA	NA
Lsat_1_v5_gn_3_120701.1	2	NA	NA
Lsat_1_v5_gn_3_59241.1	NA	NA	2
Lsat_1_v5_gn_3_94380.1	NA	4	NA
Lsat_1_v5_gn_4_181061.1	NA	NA	2
Lsat_1_v5_gn_4_19860.1	NA	NA	2
Lsat_1_v5_gn_4_69220.1	NA	4	NA
Lsat_1_v5_gn_4_72121.1	NA	4	NA
Lsat_1_v5_gn_4_84860.1	NA	4	NA
Lsat_1_v5_gn_5_116880.1	NA	4	2
Lsat_1_v5_gn_5_135061.1	3	NA	NA
Lsat_1_v5_gn_5_146040.1	NA	NA	2
Lsat_1_v5_gn_5_170161.1	NA	NA	2
Lsat_1_v5_gn_6_68581.1	NA	4	NA
Lsat_1_v5_gn_6_68921.1	NA	NA	2
Lsat_1_v5_gn_7_41160.1	NA	NA	2
Lsat_1_v5_gn_7_79861.1	NA	NA	2
Lsat_1_v5_gn_8_12161.1	NA	4	2
Lsat_1_v5_gn_8_65080.1	NA	NA	2
Lsat_1_v5_gn_8_72280.1	NA	NA	2
Lsat_1_v5_gn_8_83780.1	3	NA	1
Lsat_1_v5_gn_9_116520.1	NA	4	NA
Lsat_1_v5_gn_9_120160.1	NA	NA	2
Lsat_1_v5_gn_9_23940.1	NA	NA	2
Lsat_1_v5_gn_9_47881.1	NA	4	NA