Single miRNA

Lsa-MIRN7091

Basic info.

miRNA locus ID
Lsa-MIRN7091

miRNA locus accession
PmiREN000000170

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_9 30866414 30866698 +

Comments
A member of family MIRN7091

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 A  A     T    -        A  A  -      TC     G     ATTTAGA      TATATTCTTTTCCCAATGTTTTATGAAGTTTGATTCACCTTGAATTTCAATCTAAAATAGATAAAAATGAAAATTTTTATTATT
  CA GGTCT TTGT TTGGTTCG TT GC ATGTTT  TCTTT TATTA       GGTTTA                                                                                    
  || ||||| |||| |||||||| || || ||||||  ||||| |||||       ||||||                                                                                     
  GT TTAGG GACG AACTAGGT AA CG TGTAGG  GGGGA ATGAT       TAGATC                                                                                    
AA  G     T    G        G  C  A      -C     G     -----AA      ATAAAGATCTAAAAAGGTAATTGTATTTTTTCTCGAATAATAAAGAAAGAATAAAAGAAAGAATAAAAACTTTAGTTTCTTTAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_29421.1	NA	NA	0
Lsat_1_v5_gn_1_38680.1	NA	4	NA
Lsat_1_v5_gn_1_81581.1	NA	NA	2
Lsat_1_v5_gn_2_103001.1	NA	4	NA
Lsat_1_v5_gn_2_107300.1	3	NA	NA
Lsat_1_v5_gn_2_107421.1	1.5	2	NA
Lsat_1_v5_gn_2_15760.1	2.5	3	NA
Lsat_1_v5_gn_2_3261.1	NA	4	NA
Lsat_1_v5_gn_2_58341.1	NA	4	NA
Lsat_1_v5_gn_3_41481.1	NA	4	NA
Lsat_1_v5_gn_4_104621.1	NA	4	NA
Lsat_1_v5_gn_4_136521.1	NA	4	NA
Lsat_1_v5_gn_4_29381.1	NA	NA	2
Lsat_1_v5_gn_4_35260.1	NA	NA	2
Lsat_1_v5_gn_4_65261.1	NA	3	NA
Lsat_1_v5_gn_4_71321.1	NA	4	NA
Lsat_1_v5_gn_4_96641.1	NA	NA	2
Lsat_1_v5_gn_5_114881.1	3	NA	NA
Lsat_1_v5_gn_5_13581.1	NA	4	NA
Lsat_1_v5_gn_5_145501.1	NA	4	NA
Lsat_1_v5_gn_5_160900.1	NA	4	NA
Lsat_1_v5_gn_5_189400.1	NA	4	2
Lsat_1_v5_gn_5_32461.1	NA	NA	2
Lsat_1_v5_gn_5_69101.1	NA	NA	2
Lsat_1_v5_gn_5_75320.1	NA	NA	2
Lsat_1_v5_gn_5_8340.1	NA	4	NA
Lsat_1_v5_gn_6_23920.1	NA	3	NA
Lsat_1_v5_gn_6_48640.1	NA	NA	2
Lsat_1_v5_gn_6_66241.1	NA	4	NA
Lsat_1_v5_gn_7_12541.1	3	4	NA
Lsat_1_v5_gn_7_50541.1	NA	4	NA
Lsat_1_v5_gn_7_56381.1	NA	NA	2
Lsat_1_v5_gn_8_124281.1	NA	NA	2
Lsat_1_v5_gn_8_152201.1	NA	NA	2
Lsat_1_v5_gn_9_1260.1	NA	4	NA
Lsat_1_v5_gn_9_17340.1	NA	3	NA
Lsat_1_v5_gn_9_24780.1	NA	4	NA