Single miRNA

Lsa-MIRN7096

Basic info.

miRNA locus ID
Lsa-MIRN7096

miRNA locus accession
PmiREN000000174

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 60062056 60062206 -

Comments
A member of family MIRN7096

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

A   ----     A      T     -      T     G         -  TA  -CATC    T   -    AGAAGTA
 TCC    GGATG TTTTAC GGAAA CGCTGT GCATT GTCAACGAC AC  AC     ACCA GAT GTGG       
 |||    ||||| |||||| ||||| |||||| ||||| ||||||||| ||  ||     |||| ||| ||||        
 GGG    CCTAC AAGATG TCTTT GTGGCA CGTAA CGGTTGCTG TG  TG     TGGT TTA TATC       
    CTGT     -      T     C      -     G         G  TG  TCAAC    T   A    ACAAACT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_78160.1	NA	NA	2
Lsat_1_v5_gn_3_62261.1	NA	NA	2
Lsat_1_v5_gn_3_88960.1	NA	NA	2
Lsat_1_v5_gn_4_153121.1	NA	NA	2
Lsat_1_v5_gn_4_164101.1	NA	NA	2
Lsat_1_v5_gn_4_91521.1	NA	4	NA
Lsat_1_v5_gn_5_15140.1	NA	4	NA
Lsat_1_v5_gn_5_28320.1	0.5	1	0
Lsat_1_v5_gn_5_29081.1	1	3	0
Lsat_1_v5_gn_5_95540.1	NA	4	NA
Lsat_1_v5_gn_6_78761.1	NA	NA	2
Lsat_1_v5_gn_8_150760.1	NA	NA	2
Lsat_1_v5_gn_8_167520.1	NA	NA	2
Lsat_1_v5_gn_9_18560.1	NA	NA	2
Lsat_1_v5_gn_9_23760.1	3	4	NA