Lsa-MIRN1688

Basic info.

• miRNA locus ID
• Lsa-MIRN1688

• miRNA locus accession
• PmiREN000000178

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_6  13961282  13961437  +

• Comments
• A member of family MIRN1688

• Confidence level
• 

Secondary strurture and sequence

  TTC           T  C   C    C   AA            TT    -  --    GTATGTA    C     T    AT
     CAAGGCATTGA TG TTG TCTC CTC  GGGCTTCTAGCA  GACC CT  ACAT       ATGC TCTTA TCTT  
     ||||||||||| || ||| |||| |||  ||||||||||||  |||| ||  ||||       |||| ||||| ||||   
     GTTCTGTAACT AT GAC AGAG GAG  TTCGGAGATCGT  CTGG GG  TGTG       TACG AGAAT AGAA  
ACATT           C  A   T    T   CG            -T    A  TT    -------    -     C    TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]