Single miRNA

Lsa-MIRN7097

Basic info.

miRNA locus ID
Lsa-MIRN7097

miRNA locus accession
PmiREN000000179

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_7 32875180 32875362 +

Comments
A member of family MIRN7097

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTATCTTTTGT                                   TC    -- AC  ----  GAAACATCATTGGACTGAGGTTCTACTCT
             TTATCCTTCACAAAAGGCGCCATTAGAACAGGTAC  TCCA  A  GA    TG                             
             |||||||||||||||||||||||||||||||||||  ||||  |  ||    ||                             A
             GATAGGAGGTGTTTTCTGCGGTAATCTTGTCCATG  ATTA  G  CT    TG                             
CGCTAATGGTAGT                                   TG    TT --  TTAC  TAGCACTAATAGTAGTCTACAAGCTTTTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_10560.1	NA	NA	2
Lsat_1_v5_gn_1_15060.1	3	NA	NA
Lsat_1_v5_gn_1_15100.1	NA	3	NA
Lsat_1_v5_gn_1_24181.1	NA	NA	2
Lsat_1_v5_gn_1_76940.1	NA	NA	2
Lsat_1_v5_gn_1_89761.1	NA	4	NA
Lsat_1_v5_gn_2_104380.1	NA	3	NA
Lsat_1_v5_gn_2_114120.1	NA	NA	2
Lsat_1_v5_gn_2_24040.1	NA	4	NA
Lsat_1_v5_gn_2_27840.1	3	NA	NA
Lsat_1_v5_gn_2_27860.1	2	NA	NA
Lsat_1_v5_gn_2_37980.1	0	1	2
Lsat_1_v5_gn_2_66680.1	NA	NA	2
Lsat_1_v5_gn_2_79740.1	NA	NA	2
Lsat_1_v5_gn_3_110060.1	3	NA	NA
Lsat_1_v5_gn_3_140821.1	NA	NA	2
Lsat_1_v5_gn_3_16260.1	NA	4	NA
Lsat_1_v5_gn_3_21081.1	NA	4	NA
Lsat_1_v5_gn_3_64581.1	NA	4	2
Lsat_1_v5_gn_3_96021.1	NA	4	2
Lsat_1_v5_gn_3_98001.1	NA	4	NA
Lsat_1_v5_gn_4_120481.1	NA	4	NA
Lsat_1_v5_gn_4_151720.1	NA	NA	2
Lsat_1_v5_gn_4_177360.1	3	NA	NA
Lsat_1_v5_gn_4_182300.1	NA	NA	2
Lsat_1_v5_gn_4_26401.1	NA	4	NA
Lsat_1_v5_gn_4_32941.1	NA	4	NA
Lsat_1_v5_gn_4_84821.1	3	4	2
Lsat_1_v5_gn_4_91240.1	3	NA	NA
Lsat_1_v5_gn_5_101420.1	NA	NA	2
Lsat_1_v5_gn_5_104301.1	NA	NA	2
Lsat_1_v5_gn_5_118580.1	NA	4	NA
Lsat_1_v5_gn_5_151480.1	0.5	NA	NA
Lsat_1_v5_gn_5_151620.1	2	3	NA
Lsat_1_v5_gn_5_151640.1	2	4	NA
Lsat_1_v5_gn_5_182181.1	3	NA	NA
Lsat_1_v5_gn_5_36260.1	NA	4	NA
Lsat_1_v5_gn_5_44161.1	NA	4	NA
Lsat_1_v5_gn_5_49341.1	3	NA	NA
Lsat_1_v5_gn_5_8960.1	NA	NA	2
Lsat_1_v5_gn_5_99761.1	3	NA	NA
Lsat_1_v5_gn_6_23561.1	NA	NA	2
Lsat_1_v5_gn_6_27941.1	NA	NA	2
Lsat_1_v5_gn_6_34901.1	3	NA	NA
Lsat_1_v5_gn_6_42080.1	3	NA	NA
Lsat_1_v5_gn_6_55440.1	NA	4	NA
Lsat_1_v5_gn_7_106541.1	NA	4	2
Lsat_1_v5_gn_7_11601.1	NA	NA	2
Lsat_1_v5_gn_7_11961.1	1.5	NA	2
Lsat_1_v5_gn_7_17880.1	3	NA	NA
Lsat_1_v5_gn_7_18061.1	NA	4	NA
Lsat_1_v5_gn_7_24341.1	2.5	4	2
Lsat_1_v5_gn_7_24441.1	0	0	2
Lsat_1_v5_gn_7_24501.1	2	3	NA
Lsat_1_v5_gn_7_24741.1	1.5	3	NA
Lsat_1_v5_gn_7_24761.1	0.5	1	NA
Lsat_1_v5_gn_7_24981.1	3	NA	NA
Lsat_1_v5_gn_7_29400.1	2.5	NA	NA
Lsat_1_v5_gn_7_34481.1	NA	NA	2
Lsat_1_v5_gn_7_44940.1	3	NA	NA
Lsat_1_v5_gn_7_56421.1	NA	NA	2
Lsat_1_v5_gn_7_65120.1	2	NA	NA
Lsat_1_v5_gn_7_65780.1	1.5	NA	NA
Lsat_1_v5_gn_7_66041.1	NA	NA	2
Lsat_1_v5_gn_7_66540.1	1	4	NA
Lsat_1_v5_gn_7_73440.1	NA	4	NA
Lsat_1_v5_gn_7_79861.1	3	NA	NA
Lsat_1_v5_gn_7_86481.1	3	4	NA
Lsat_1_v5_gn_7_94701.1	NA	4	NA
Lsat_1_v5_gn_8_105060.1	3	NA	NA
Lsat_1_v5_gn_8_121041.1	3	NA	NA
Lsat_1_v5_gn_8_126220.1	1	3	NA
Lsat_1_v5_gn_8_129901.1	NA	NA	2
Lsat_1_v5_gn_8_131700.1	1.5	NA	NA
Lsat_1_v5_gn_8_150760.1	NA	NA	2
Lsat_1_v5_gn_8_158161.1	NA	NA	2
Lsat_1_v5_gn_8_24221.1	3	NA	NA
Lsat_1_v5_gn_8_31420.1	3	NA	NA
Lsat_1_v5_gn_9_111840.1	NA	4	2
Lsat_1_v5_gn_9_117000.1	NA	4	NA
Lsat_1_v5_gn_9_119461.1	NA	NA	2
Lsat_1_v5_gn_9_31601.1	NA	4	NA
Lsat_1_v5_gn_9_39801.1	NA	4	NA
Lsat_1_v5_gn_9_40260.1	3	NA	NA
Lsat_1_v5_gn_9_48641.1	2.5	NA	NA
Lsat_1_v5_gn_9_56500.1	NA	NA	2
Lsat_1_v5_gn_9_70180.1	NA	4	NA
Lsat_1_v5_gn_9_7340.1	NA	NA	2
Lsat_1_v5_gn_9_9321.1	3	NA	NA