Single miRNA

Lsa-MIRN7099

Basic info.

miRNA locus ID
Lsa-MIRN7099

miRNA locus accession
PmiREN000000186

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 258618292 258618498 +

Comments
A member of family MIRN7099

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTTTGACACATCAGCATATA       C    -  C   ATCAAAACTA    -------GTCA      CACATCAGCATGTAACCTGGTTAACCGGTCAAGTGGT
                      ATGTCAG ATGC CA GTC          ACAC           ACATGC                                     
                      ||||||| |||| || |||          ||||           ||||||                                      
                      TACGGTC TACG GT TAG          TGTG           CACAGT                                     
AAAACAAATATCATTGATAACA       T    T  C   -ACCTNAAAC    GCACAAAAAAA      TAAAACTGTGACAAAAAAAGTTAAACAATGTTAAGAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_4_16241.1	NA	NA	2
Lsat_1_v5_gn_5_133681.1	NA	NA	2
Lsat_1_v5_gn_5_1800.1	NA	4	NA
Lsat_1_v5_gn_7_12581.1	3	NA	NA
Lsat_1_v5_gn_8_11281.1	3	NA	NA
Lsat_1_v5_gn_8_150700.1	NA	NA	2
Lsat_1_v5_gn_9_13880.1	2.5	NA	NA
Lsat_1_v5_gn_9_46800.1	3	4	NA
Lsat_1_v5_gn_9_55081.1	NA	NA	2