Single miRNA

Lsa-MIR1871

Basic info.

miRNA locus ID
Lsa-MIR1871

miRNA locus accession
PmiREN000000187

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_9 50577788 50577882 +

Comments
A member of family MIR1871

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

             A   T                    A      TAT
  GGATTTATATA AAT ATTCAATATGGTATCAGGGT ATTTAA   
  ||||||||||| ||| |||||||||||||||||||| ||||||   T
  CTTAAGTATAT TTA TAGGTTGTACCATAGTCTCG TAAATT   
TT           C   T                    G      TAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_12040.1	NA	NA	2
Lsat_1_v5_gn_0_20160.1	NA	NA	2
Lsat_1_v5_gn_0_31360.1	NA	4	2
Lsat_1_v5_gn_1_19681.1	NA	4	NA
Lsat_1_v5_gn_1_20540.1	3	NA	NA
Lsat_1_v5_gn_1_46781.1	NA	4	NA
Lsat_1_v5_gn_1_6581.1	3	NA	NA
Lsat_1_v5_gn_2_67780.1	NA	NA	2
Lsat_1_v5_gn_2_73420.1	NA	NA	2
Lsat_1_v5_gn_3_121920.1	NA	NA	2
Lsat_1_v5_gn_3_27400.1	3	NA	NA
Lsat_1_v5_gn_3_92360.1	2.5	NA	NA
Lsat_1_v5_gn_4_52380.1	NA	4	NA
Lsat_1_v5_gn_4_92360.1	3	NA	NA
Lsat_1_v5_gn_4_92381.1	3	NA	NA
Lsat_1_v5_gn_5_173401.1	NA	NA	2
Lsat_1_v5_gn_5_178381.1	NA	NA	2
Lsat_1_v5_gn_5_29921.1	NA	4	NA
Lsat_1_v5_gn_6_14580.1	NA	NA	2
Lsat_1_v5_gn_6_1661.1	NA	4	NA
Lsat_1_v5_gn_6_28821.1	NA	3	NA
Lsat_1_v5_gn_6_41440.1	NA	4	NA
Lsat_1_v5_gn_6_57320.1	NA	3	NA
Lsat_1_v5_gn_6_91280.1	NA	4	NA
Lsat_1_v5_gn_7_3280.1	3	NA	NA
Lsat_1_v5_gn_7_70840.1	NA	NA	2
Lsat_1_v5_gn_7_9300.1	NA	NA	2
Lsat_1_v5_gn_8_115261.1	NA	NA	2
Lsat_1_v5_gn_8_12460.1	NA	NA	2
Lsat_1_v5_gn_8_160241.1	2.5	NA	NA
Lsat_1_v5_gn_8_27820.1	NA	NA	2
Lsat_1_v5_gn_8_45621.1	NA	NA	2
Lsat_1_v5_gn_8_57181.1	NA	4	NA
Lsat_1_v5_gn_9_20121.1	3	NA	2
Lsat_1_v5_gn_9_59340.1	NA	NA	2
Lsat_1_v5_gn_9_63420.1	NA	NA	2
Lsat_1_v5_gn_9_7541.1	NA	3	NA
Lsat_1_v5_gn_9_86761.1	NA	NA	2