Single miRNA

Lsa-MIRN1655

Basic info.

miRNA locus ID
Lsa-MIRN1655

miRNA locus accession
PmiREN000000190

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_5 52218857 52218989 +

Comments
A member of family MIRN1655

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CGC   T          TAT  C                T      TTT   AATA        AC
     ATA ATTAAGTATA   CA CAAATGAATATACATC GATTCT   GTT    TCAAGTAT  
     ||| ||||||||||   || |||||||||||||||| ||||||   |||    ||||||||   
     TAT TAGTTCATAT   GT GTTTACTTATATGTAG CTAAGA   CAA    AGTTCGTA  
AACCA   C          CAC  A                -      TAT   GTTA        TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_16380.1	3	NA	1
Lsat_1_v5_gn_0_21600.1	3	NA	NA
Lsat_1_v5_gn_1_105021.1	3	3	0
Lsat_1_v5_gn_1_117861.1	2.5	NA	NA
Lsat_1_v5_gn_1_19380.1	2	4	NA
Lsat_1_v5_gn_1_36260.1	3	NA	NA
Lsat_1_v5_gn_1_42621.1	2.5	NA	NA
Lsat_1_v5_gn_1_53961.1	3	NA	NA
Lsat_1_v5_gn_1_76480.1	NA	4	NA
Lsat_1_v5_gn_1_84501.1	3	NA	NA
Lsat_1_v5_gn_1_85181.1	2.5	NA	0
Lsat_1_v5_gn_1_85960.1	NA	NA	1
Lsat_1_v5_gn_1_86061.1	1.5	2	0
Lsat_1_v5_gn_1_86101.1	3	NA	NA
Lsat_1_v5_gn_1_86381.1	3	NA	0
Lsat_1_v5_gn_1_86441.1	1.5	2	0
Lsat_1_v5_gn_1_86480.1	3	4	0
Lsat_1_v5_gn_1_86641.1	2.5	4	0
Lsat_1_v5_gn_1_86860.1	0.5	NA	0
Lsat_1_v5_gn_1_87640.1	NA	4	NA
Lsat_1_v5_gn_1_87740.1	2	NA	NA
Lsat_1_v5_gn_1_87801.1	3	4	NA
Lsat_1_v5_gn_1_87860.1	2	NA	2
Lsat_1_v5_gn_1_87900.1	2	NA	0
Lsat_1_v5_gn_1_88201.1	3	NA	NA
Lsat_1_v5_gn_1_88221.1	3	3	0
Lsat_1_v5_gn_1_88321.1	1	NA	0
Lsat_1_v5_gn_1_88361.1	NA	NA	0
Lsat_1_v5_gn_1_88381.1	NA	NA	0
Lsat_1_v5_gn_1_88661.1	NA	4	0
Lsat_1_v5_gn_1_88821.1	2	NA	NA
Lsat_1_v5_gn_1_89060.1	2	NA	0
Lsat_1_v5_gn_1_89461.1	3	NA	0
Lsat_1_v5_gn_1_89581.1	NA	4	NA
Lsat_1_v5_gn_1_90161.1	3	NA	1
Lsat_1_v5_gn_1_90341.1	3	NA	NA
Lsat_1_v5_gn_1_90561.1	2.5	4	NA
Lsat_1_v5_gn_2_108360.1	3	NA	2
Lsat_1_v5_gn_2_117520.1	3	NA	0
Lsat_1_v5_gn_2_119420.1	2	2	0
Lsat_1_v5_gn_2_131260.1	NA	NA	2
Lsat_1_v5_gn_2_35801.1	2.5	NA	NA
Lsat_1_v5_gn_2_45340.1	2.5	NA	2
Lsat_1_v5_gn_2_57021.1	2.5	4	0
Lsat_1_v5_gn_2_57721.1	3	NA	NA
Lsat_1_v5_gn_2_57901.1	2.5	NA	0
Lsat_1_v5_gn_2_88921.1	2.5	NA	NA
Lsat_1_v5_gn_3_108620.1	3	4	0
Lsat_1_v5_gn_3_109341.1	2.5	NA	0
Lsat_1_v5_gn_3_109661.1	NA	NA	0
Lsat_1_v5_gn_3_135760.1	3	NA	NA
Lsat_1_v5_gn_3_25621.1	2	NA	2
Lsat_1_v5_gn_3_47760.1	3	NA	NA
Lsat_1_v5_gn_3_95200.1	3	4	NA
Lsat_1_v5_gn_4_151720.1	NA	NA	2
Lsat_1_v5_gn_4_155100.1	3	4	0
Lsat_1_v5_gn_4_162500.1	NA	NA	0
Lsat_1_v5_gn_4_162700.1	NA	NA	0
Lsat_1_v5_gn_4_162801.1	NA	NA	0
Lsat_1_v5_gn_4_172801.1	2.5	NA	2
Lsat_1_v5_gn_4_59381.1	NA	4	NA
Lsat_1_v5_gn_4_6121.1	NA	4	2
Lsat_1_v5_gn_4_95441.1	2.5	NA	NA
Lsat_1_v5_gn_4_98620.1	1.5	NA	NA
Lsat_1_v5_gn_5_142161.1	3	NA	NA
Lsat_1_v5_gn_5_145661.1	NA	NA	2
Lsat_1_v5_gn_5_15880.1	3	NA	NA
Lsat_1_v5_gn_5_159001.1	NA	NA	2
Lsat_1_v5_gn_5_2441.1	NA	NA	2
Lsat_1_v5_gn_5_49081.1	2.5	NA	2
Lsat_1_v5_gn_5_50020.1	2	NA	0
Lsat_1_v5_gn_5_50580.1	3	4	NA
Lsat_1_v5_gn_5_54160.1	NA	NA	0
Lsat_1_v5_gn_5_54260.1	3	NA	NA
Lsat_1_v5_gn_5_54521.1	NA	NA	0
Lsat_1_v5_gn_5_54661.1	2.5	NA	2
Lsat_1_v5_gn_5_57381.1	NA	NA	2
Lsat_1_v5_gn_5_61420.1	2	NA	NA
Lsat_1_v5_gn_5_61781.1	3	4	2
Lsat_1_v5_gn_5_80540.1	2.5	4	NA
Lsat_1_v5_gn_5_80580.1	2.5	4	NA
Lsat_1_v5_gn_5_80600.1	2.5	NA	NA
Lsat_1_v5_gn_6_17600.1	1.5	NA	0
Lsat_1_v5_gn_6_24060.1	2.5	NA	NA
Lsat_1_v5_gn_6_2461.1	1.5	NA	1
Lsat_1_v5_gn_6_58800.1	3	NA	0
Lsat_1_v5_gn_6_74680.1	3	4	0
Lsat_1_v5_gn_6_74900.1	2.5	NA	1
Lsat_1_v5_gn_6_75300.1	3	4	0
Lsat_1_v5_gn_6_75361.1	1.5	2	2
Lsat_1_v5_gn_7_31301.1	3	4	NA
Lsat_1_v5_gn_7_44460.1	NA	4	NA
Lsat_1_v5_gn_7_44480.1	3	4	NA
Lsat_1_v5_gn_7_44540.1	NA	4	NA
Lsat_1_v5_gn_7_44721.1	NA	4	NA
Lsat_1_v5_gn_7_44760.1	NA	4	NA
Lsat_1_v5_gn_7_62960.1	2.5	NA	NA
Lsat_1_v5_gn_7_72081.1	NA	NA	2
Lsat_1_v5_gn_8_101860.1	3	NA	NA
Lsat_1_v5_gn_8_102701.1	2.5	NA	NA
Lsat_1_v5_gn_8_102901.1	2	NA	0
Lsat_1_v5_gn_8_102941.1	2	NA	NA
Lsat_1_v5_gn_8_130641.1	NA	4	NA
Lsat_1_v5_gn_8_25860.1	2	NA	NA
Lsat_1_v5_gn_8_25880.1	2	NA	NA
Lsat_1_v5_gn_8_26681.1	2	4	NA
Lsat_1_v5_gn_8_27040.1	2	NA	NA
Lsat_1_v5_gn_8_27081.1	2	NA	NA
Lsat_1_v5_gn_8_27320.1	3	NA	NA
Lsat_1_v5_gn_8_67480.1	2.5	NA	NA
Lsat_1_v5_gn_8_821.1	NA	NA	2
Lsat_1_v5_gn_9_107881.1	2.5	NA	NA
Lsat_1_v5_gn_9_108920.1	NA	4	2
Lsat_1_v5_gn_9_119461.1	NA	NA	2
Lsat_1_v5_gn_9_120080.1	NA	4	0
Lsat_1_v5_gn_9_121380.1	2	NA	2
Lsat_1_v5_gn_9_19960.1	NA	NA	2
Lsat_1_v5_gn_9_4720.1	2.5	NA	0
Lsat_1_v5_gn_9_66181.1	NA	NA	2
Lsat_1_v5_gn_9_71621.1	NA	NA	0
Lsat_1_v5_gn_9_95821.1	3	NA	NA