Single miRNA

Lsa-MIRN7100

Basic info.

miRNA locus ID
Lsa-MIRN7100

miRNA locus accession
PmiREN000000191

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_6 69839790 69839920 -

Comments
A member of family MIRN7100

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTC              A           T G           TATC     --C   T   C  AG
     GAAACATGGTTGTC GTGGTGCAACG G AACGCCGAGTT    TCTGC   GAG TAG TC  
     |||||||||||||| ||||||||||| | |||||||||||    |||||   ||| ||| ||   
     CTTTGTGTCAATAG CACCACGTTGC T TTGCGGCTCAA    AGATG   CTC ATT AG  
TTTCT              C           - G           --TA     ATC   T   T  TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_0_4121.1	NA	NA	0
Lsat_1_v5_gn_1_16121.1	NA	NA	2
Lsat_1_v5_gn_1_95780.1	NA	NA	1
Lsat_1_v5_gn_3_138380.1	NA	4	NA
Lsat_1_v5_gn_3_44640.1	2.5	NA	NA
Lsat_1_v5_gn_4_78101.1	NA	4	NA
Lsat_1_v5_gn_6_11441.1	NA	NA	2
Lsat_1_v5_gn_7_54281.1	NA	NA	2
Lsat_1_v5_gn_8_41821.1	NA	NA	2