Single miRNA

Lsa-MIR156a

Basic info.

miRNA locus ID
Lsa-MIR156a

miRNA locus accession
PmiREN000000002

Organism
Lactuca sativa

Genomic location
Lsat_1_v8_lg_7 89054668 89054834 -

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

      A         AA  A  A        -    A         G    G    TCTT   TGA     -GAGAAAGAGAAAG  AGA
     G GTGTAAGGG  GG GA GTGACAGA AGAG GTGAGCACA ATGG CTTT    GCA   TATGA              AG   
     | |||||||||  || || |||||||| |||| ||||||||| |||| ||||    |||   |||||              ||    
     C CACATTCTC  CC CT CACTGTCT TCTC CACTCGTGT TATC GAAG    CGT   ATACT              TC   
GTTCT -         -A  A  -        A    C         G    -    --TT   ---     GAGGAACATATATA  GAG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID: 8
Chromosome: Lsat_1_v8_lg_7
Cluster start: 89054668
Cluster end: 89054950

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Lsa-miR156a , Lsa-miR156b , Lsa-miR156g	PmiREN000000002, precursor000033, PmiREN000000013	Lsat_1_v8_lg_7	-	89054668	89054950

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_1_128400.1	2	2	NA
Lsat_1_v5_gn_1_14560.1	0	0	0
Lsat_1_v5_gn_1_34600.1	NA	4	NA
Lsat_1_v5_gn_1_50821.1	NA	NA	2
Lsat_1_v5_gn_1_52780.1	NA	4	NA
Lsat_1_v5_gn_2_22181.1	NA	4	NA
Lsat_1_v5_gn_2_86281.1	3	NA	NA
Lsat_1_v5_gn_3_11920.1	NA	NA	2
Lsat_1_v5_gn_3_135740.1	3	NA	NA
Lsat_1_v5_gn_3_139021.1	NA	4	NA
Lsat_1_v5_gn_3_31000.1	1	1	2
Lsat_1_v5_gn_3_4041.1	NA	NA	2
Lsat_1_v5_gn_3_89440.1	2.5	NA	NA
Lsat_1_v5_gn_4_112081.1	3	NA	NA
Lsat_1_v5_gn_4_113241.1	2.5	3	NA
Lsat_1_v5_gn_4_1141.1	1	2	0
Lsat_1_v5_gn_4_135220.1	3	NA	NA
Lsat_1_v5_gn_4_139200.1	NA	4	NA
Lsat_1_v5_gn_4_184960.1	1	2	NA
Lsat_1_v5_gn_4_421.1	1	NA	0
Lsat_1_v5_gn_4_81541.1	1	2	NA
Lsat_1_v5_gn_5_12360.1	1	NA	NA
Lsat_1_v5_gn_5_176161.1	NA	4	NA
Lsat_1_v5_gn_6_116940.1	NA	4	NA
Lsat_1_v5_gn_7_11040.1	1	2	0
Lsat_1_v5_gn_7_56801.1	NA	4	NA
Lsat_1_v5_gn_7_9801.1	3	NA	NA
Lsat_1_v5_gn_8_117960.1	NA	NA	2
Lsat_1_v5_gn_8_134640.1	1	2	NA
Lsat_1_v5_gn_8_59160.1	NA	4	NA
Lsat_1_v5_gn_9_28021.1	1	2	NA